Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq305 156 4e-33
>seq305
Length=710094
Score = 156 bits (172), Expect = 4e-33
Identities = 458/694 (66%), Gaps = 14/694 (2%)
Strand=Plus/Plus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| ||||||||||| ||||| | | ||||||| || || ||||| || || | |
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
|| | ||||| || | ||| || || || ||||||||| | || || |
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAG-ACATGCGAAATCGC 16976
| ||||| | || | || |||| |||||||||| ||| || ||||| |
Sbjct 408502 GATACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATCAC 408560
Query 16977 AATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034
|||| || || ||||| | || |||| || ||||| || ||||| || ||||||||
Sbjct 408561 AATGCAAACCTTCGTCAC-GC-GATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAG 408618
Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094
|| |||||||| ||||| || || | ||| || || |||||||| || || ||
Sbjct 408619 GCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAAC 408678
Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGA-ATCCATTTC 17152
| ||||| || |||| ||||| | | | || | | | | || |||||| |
Sbjct 408679 AGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGAT--GATATCCATGAC 408736
Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATT 17210
|||| || |||||| |||| || ||| ||||| ||||| || ||||| |
Sbjct 408737 AAAGCCCAATCAGCTTTT--CTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAAT 408794
Query 17211 TCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGT 17270
|| || | | || | ||||| || || || || | |||||||||||| ||||
Sbjct 408795 ATTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGT 408854
Query 17271 GTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTT 17330
| | |||||||| || ||||| || || || ||||| |||||||| | || ||| || |
Sbjct 408855 GAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCT 408914
Query 17331 CCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACG 17390
| | |||| || | ||||| || || || ||||| ||| || || || || |
Sbjct 408915 CTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAG 408974
Query 17391 CCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAAT 17450
|||| | ||| |||||||||| |||| | ||| || |||||| | ||
Sbjct 408975 CCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATAT 409034
Query 17451 CTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484
|||| || | ||||||||| || ||||||||
Sbjct 409035 CTTTAGACAGATCCACTTCCTCAACAGTCCAAAA 409068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517467696448560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |