Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq326 107 2e-18 >seq326 Length=702362 Score = 107 bits (118), Expect = 2e-18 Identities = 508/799 (64%), Gaps = 6/799 (1%) Strand=Plus/Plus Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608 ||||| || ||| | || || | || | ||||||| ||| || | | || ||||| Sbjct 509527 GATCGCACTGGAGTGGGTACCCTCTCATCATTTGGAGCTCAAATGCGTTTCGATATGCGA 509586 Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668 | |||||| | | || || ||||| || || |||||||| || | |||||| | Sbjct 509587 GAATCCTTTCCTTTGCTCACCACTAAGCGGGTCTTCTGGAGGGCTGTTGCAGAAGAGCTT 509646 Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGA-TATACACAT 18727 | ||||| || | || | ||| || | ||||| || | |||| ||| ||||| Sbjct 509647 ATTTGGTTCATACATGGCTGCACCAATGC-AAAGATTCTGCAGGACAAGAATATTCACAT 509705 Query 18728 ATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACAC 18787 ||||||| || | | || | ||| | ||| | || ||| | || | Sbjct 509706 ATGGGATGGCAACAGCACACGCGACTTTTTGGATAAGCTCGGTTTCACGGATCGAGAGGA 509765 Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 || || | || || | || || || |||||| | ||||||||||| | || | Sbjct 509766 AGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTACCGAAC 509825 Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAA-TCGATCAGCTGCAAACTGTTATAGATACAA 18906 || || |||||| ||| | ||| | || || || || ||||| |||||| Sbjct 509826 TTGCCACGATAACTATG-ACAACGAGGGTGTGGACCAACTAAAACAGGTTATTCATACAA 509884 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | || || || || | |||| || || || || |||||||||| | ||| || | Sbjct 509885 TACGCACTAATCCCGATGACAGACGTATCATGATGTCCGCTTGGAATCCCATGGACATGC 509944 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026 | |||| | ||||| ||||| || |||||||| ||||| || ||||| Sbjct 509945 CGCAGATGGCTTTGCCTCCCTGTCATTGCTTGGCCCAGTTTTATGTTGCCAATGGTGAGC 510004 Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086 |||| || ||| |||| || | | || |||||| | || ||||| |||||||||| Sbjct 510005 TATCTTGTCAATTATATCAACGCAGTGCCGACATGGGCTTAGGAGTACCATTCAACATTG 510064 Query 19087 CTGGATATGCACTTCTT-ACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGAT 19145 | |||||| ||| || ||||| || | || || | || || || || | || ||| Sbjct 510065 CCTCATATGC-CTTGTTGACCTATATGATTGCCCACATAACTGGCCTAAAGCCTGGTGAT 510123 Query 19146 TTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTG 19205 || | || ||| |||| ||||| ||| | || ||| || | || | || | | | Sbjct 510124 TTTGTACACACATTGGGCGATGCCCATGTATATAAGAACCACGTTGAACCATTGAGGGAG 510183 Query 19206 CAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGAT 19265 || || || || | ||||||||| | | ||| | || || ||| |||| Sbjct 510184 CAATTAAAACGCAAACCCAGACCTTTTCCCAAATTGATAATCAAACGTAAAGTAGAAGAT 510243 Query 19266 ATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTA 19325 || | |||||||||| || ||||| | ||| | || || ||| | || | Sbjct 510244 ATTGAGGACTTTAAATTTGAAGATTTCGAAATTGTCGATTACAAACCATATCCAAAAATT 510303 Query 19326 AAAATGGAAATGGCTCTTT 19344 |||||||||||||| ||| Sbjct 510304 CAAATGGAAATGGCTGTTT 510322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399445368043890