Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq326 107 2e-18
>seq326
Length=702362
Score = 107 bits (118), Expect = 2e-18
Identities = 508/799 (64%), Gaps = 6/799 (1%)
Strand=Plus/Plus
Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608
||||| || ||| | || || | || | ||||||| ||| || | | || |||||
Sbjct 509527 GATCGCACTGGAGTGGGTACCCTCTCATCATTTGGAGCTCAAATGCGTTTCGATATGCGA 509586
Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668
| |||||| | | || || ||||| || || |||||||| || | |||||| |
Sbjct 509587 GAATCCTTTCCTTTGCTCACCACTAAGCGGGTCTTCTGGAGGGCTGTTGCAGAAGAGCTT 509646
Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGA-TATACACAT 18727
| ||||| || | || | ||| || | ||||| || | |||| ||| |||||
Sbjct 509647 ATTTGGTTCATACATGGCTGCACCAATGC-AAAGATTCTGCAGGACAAGAATATTCACAT 509705
Query 18728 ATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACAC 18787
||||||| || | | || | ||| | ||| | || ||| | || |
Sbjct 509706 ATGGGATGGCAACAGCACACGCGACTTTTTGGATAAGCTCGGTTTCACGGATCGAGAGGA 509765
Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847
|| || | || || | || || || |||||| | ||||||||||| | || |
Sbjct 509766 AGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTACCGAAC 509825
Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAA-TCGATCAGCTGCAAACTGTTATAGATACAA 18906
|| || |||||| ||| | ||| | || || || || ||||| ||||||
Sbjct 509826 TTGCCACGATAACTATG-ACAACGAGGGTGTGGACCAACTAAAACAGGTTATTCATACAA 509884
Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966
| || || || || | |||| || || || || |||||||||| | ||| || |
Sbjct 509885 TACGCACTAATCCCGATGACAGACGTATCATGATGTCCGCTTGGAATCCCATGGACATGC 509944
Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026
| |||| | ||||| ||||| || |||||||| ||||| || |||||
Sbjct 509945 CGCAGATGGCTTTGCCTCCCTGTCATTGCTTGGCCCAGTTTTATGTTGCCAATGGTGAGC 510004
Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086
|||| || ||| |||| || | | || |||||| | || ||||| ||||||||||
Sbjct 510005 TATCTTGTCAATTATATCAACGCAGTGCCGACATGGGCTTAGGAGTACCATTCAACATTG 510064
Query 19087 CTGGATATGCACTTCTT-ACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGAT 19145
| |||||| ||| || ||||| || | || || | || || || || | || |||
Sbjct 510065 CCTCATATGC-CTTGTTGACCTATATGATTGCCCACATAACTGGCCTAAAGCCTGGTGAT 510123
Query 19146 TTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTG 19205
|| | || ||| |||| ||||| ||| | || ||| || | || | || | | |
Sbjct 510124 TTTGTACACACATTGGGCGATGCCCATGTATATAAGAACCACGTTGAACCATTGAGGGAG 510183
Query 19206 CAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGAT 19265
|| || || || | ||||||||| | | ||| | || || ||| ||||
Sbjct 510184 CAATTAAAACGCAAACCCAGACCTTTTCCCAAATTGATAATCAAACGTAAAGTAGAAGAT 510243
Query 19266 ATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTA 19325
|| | |||||||||| || ||||| | ||| | || || ||| | || |
Sbjct 510244 ATTGAGGACTTTAAATTTGAAGATTTCGAAATTGTCGATTACAAACCATATCCAAAAATT 510303
Query 19326 AAAATGGAAATGGCTCTTT 19344
|||||||||||||| |||
Sbjct 510304 CAAATGGAAATGGCTGTTT 510322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399445368043890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |