Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1090 448 6e-121 seq305 248 1e-60 >seq1090 Length=275775 Score = 448 bits (496), Expect = 6e-121 Identities = 1487/2279 (65%), Gaps = 54/2279 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || | | || || ||||| || | | ||| ||||| ||||| || || Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| || ||||| || || | |||| || | || || || | | Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| ||| Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 53046 | ||||| | ||||||||| | ||||| || | ||| | || | |||| |||| Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT-TCTTTGGGAAT 261338 Query 53047 GT--TTG-TATTCTGAATAGATCCACCATCTACCA-TAATCCTATTCTTGATCTCATCAT 53102 | | | | || || || || |||| ||| | |||| |||| || || || |||| Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGG-CTAGAAATAATTTTATTTTTCATTTCCTCAT 261279 Query 53103 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 53162 ||||| | ||||| ||| || |||| | ||| |||| || | | ||||| | Sbjct 261278 CCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCAC 261219 Query 53163 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 53222 | || | ||| | || || ||||| || || |||||||| | || ||||| || | Sbjct 261218 CCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGC 261159 Query 53223 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 53282 ||| |||||| ||||| || || || ||||| || |||| | | ||| | | || Sbjct 261158 CCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACAC 261099 Query 53283 CGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAAC 53340 | ||||| | ||| | || ||||| | |||||| ||| ||||| | || || Sbjct 261098 C--ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTT 261041 Query 53341 NNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 53396 ||| || ||||| || ||||| | |||| ||| || | Sbjct 261040 GTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT----TCCTGGATACGTTT 260985 Query 53397 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 53456 | || || || || | ||||| | ||||||||| || || || ||||| || ||||| | Sbjct 260984 CATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAG 260925 Query 53457 TTTCGAAGATCTTCTTATTTAGATCTTGT--GCTTCCAGGCTATCAAATGGATAATTTAA 53514 |||| || || | | ||| | || ||| || ||| ||| || | |||||| | Sbjct 260924 TTTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCAT 260867 Query 53515 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 |||||| | | || || || || || |||||||| || || || | |||||| ||| Sbjct 260866 GAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATT 260807 Query 53575 AGAGATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 ||| |||| | || ||| | | ||||| || || | |||||| ||||| ||||| || Sbjct 260806 AGAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTG 260749 Query 53633 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TTGTCCATCTATT 53689 | | | ||||| || ||||| ||| ||| ||||| || | | | Sbjct 260748 CGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC 260689 Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 ||||||||||||| ||| || |||| || || || || | |||| | | | | Sbjct 260688 ACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAA 260629 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| | || || ||||| | ||| || || || ||||| || | ||||||||||||| Sbjct 260628 TATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTA 260569 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 || || ||||| | |||||| | || ||| | || || |||||||| | |||||| Sbjct 260568 CTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGAT 260509 Query 53870 TCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC-- 53927 |||||||| || ||| | | | ||||| || | | ||| | |||| | Sbjct 260508 TCTATAATGGCAAACCAAAGCGCCTGCGCCTTAATGGT---TCTGT-TAGCTTTGCCGGC 260453 Query 53928 --TTTCGTATAGTGTATACAATCGT-TCAAACTCGTCTCCCCAAACATTGTCCAATCCAG 53984 |||||||| | || || | | ||||| || || ||||| || | | | ||| | Sbjct 260452 CTTTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTG 260394 Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 54044 |||||| | |||||||| | ||||| || |||| || | ||| ||| |||||| | Sbjct 260393 GACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACA 260334 Query 54045 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 ||| || ||||||||||| ||| || |||||||||| | ||| || || || || ||| Sbjct 260333 AATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTA 260275 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 |||||||| | ||| | ||| | | || || |||||||| ||||||||||| |||| Sbjct 260274 TTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCA 260215 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | | ||||| |||||| || |||||||| | ||| | || ||||| | ||| Sbjct 260214 AATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACT 260155 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283 || ||||| || | | ||||||||| | ||||| || |||| || | |||| | Sbjct 260154 CTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTA 260095 Query 54284 GCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 || ||||| | | |||||| || || || || || ||| || || | || | Sbjct 260094 GCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCATAGCAC 260037 Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401 | | | | | | | | |||||||| ||| ||| | | |||| | | || |||| Sbjct 260036 ACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGGAAAC 259977 Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 | ||||| ||| ||||| | || | ||| ||| || || || || || || |||| Sbjct 259976 AAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGGGTAA 259917 Query 54462 ACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 | | || || || || || || || || || || || ||||| ||| | |||| Sbjct 259916 AGTAACGCTCGGACAACCAG-TTATAAGTTTCAATGGCCGAATCTATGTCCTCTCCATGA 259858 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || ||||| || |||||||| | ||| || || || | ||| | ||||| || ||| Sbjct 259857 ATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATTCATT 259798 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640 |||| | || || ||| | ||| ||||| ||||| |||||||| ||| || || Sbjct 259797 TTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATCACGG 259738 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT-AAT 54699 ||||| | ||| | |||||||| ||| || ||| | || |||| || | || Sbjct 259737 TCGTATACAATGGCCGAGTTGAGGCGCTCCGAATTTTTCATGACCACAT-TATAATGAAA 259679 Query 54700 ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTT 54759 | ||||| || | | || ||| | | | |||| | | | | || | Sbjct 259678 ATCGGAAATCATTGATGCCCTTTGTCCAGTCTCGTCACTGACGAAATGATGCAGGTCACT 259619 Query 54760 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 54819 || ||||| || | ||||| ||||||||||| | || || || || || | ||| Sbjct 259618 GATGACTTCCGAGAAAACCTTTTTAGTTTCTTTGTGCAAGTTGGACACAGCAATGCGAGC 259559 Query 54820 GGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAG 54879 || | | |||||||| | ||| | ||| || ||||| ||| |||| || | || Sbjct 259558 CGCCAACAAAGCATAATCGGCATGATTTGTTGTGAGTGTGGCAGCTGTTTCTGCGGCCAA 259499 Query 54880 AGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 54939 | ||||||||| | ||||| || || ||| | || | ||| ||| | | | ||| Sbjct 259498 ATTGTCCAATTGTTGAGTTGTGACGCCGCAATACAAACCATTGATTACCCTTAAGGTTAT 259439 Query 54940 TTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATG 54998 | ||||| | || |||| | |||||| || || ||||| || || || | Sbjct 259438 GGCCACTGGATCGACGAAGTCCATGTTGAGGCCATAGCA-AAGTTTCTGGATGCGTGAAG 259380 Query 54999 TGATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 | || ||||| || ||| || | || ||| |||| ||||| | ||||| | ||| Sbjct 259379 TAATCTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCACGTTTGACCACAAAAAGTTT 259322 >seq305 Length=710094 Score = 248 bits (274), Expect = 1e-60 Identities = 484/707 (68%), Gaps = 15/707 (2%) Strand=Plus/Plus Query 23969 ATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 24028 |||||| ||||| || ||||| ||| | ||||||||||| || || | || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 24029 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 24088 ||| | || | ||||| ||||| ||||| || ||||| ||| |||| || || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTAT----CT 408497 Query 24089 TACTGTTTC-TTCACTCGGTGGA----TACAATAAATGTTTAAACATCAA-ACATGCGAA 24142 | || | | ||| || | ||| | || | || ||||||||||| ||| || || Sbjct 408498 CAATGATACGTTCTCT-GCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAA 408555 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 ||| || || | ||| ||||| | || | |||||||| || || | |||||||| Sbjct 408556 ATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCAT 408615 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 ||||||||| || || | ||| || ||||| ||||| || ||||| || ||||| Sbjct 408616 TAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTC 408675 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC--ATG-TATCCACTT 24319 || || ||||| || || | | ||| ||| || || || ||| |||||| Sbjct 408676 AACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGA 408735 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||||||| || || |||| ||| ||||| || || || ||||| || | ||| Sbjct 408736 CAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATA 408795 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 | || | || |||||||| ||| || ||||| | || || ||||||||||| || Sbjct 408796 TTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTG 408855 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 || || || || || || || || || ||||| || | || || || | || || || Sbjct 408856 AACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTC 408915 Query 24500 TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | | |||||| || | | ||| ||||| ||||| || || ||| ||||| || || Sbjct 408916 TTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGC 408975 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 24619 ||| ||||| || |||||| |||| | ||| ||||| | ||| ||| ||||| Sbjct 408976 CAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATC 409035 Query 24620 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 |||||| | ||||||||| || || ||||||||||||||||| |||| Sbjct 409036 TTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593632230056160