Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 104 2e-17
seq404 89.7 4e-13
seq906 84.2 2e-11
>seq1094
Length=241507
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| ||||||||| ||||||||||||||||| ||||| | |
Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| | | ||||||| |||||||| ||| | || | | || || || ||
Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||| ||||| ||| || || || | | | ||| || |||||
Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
|||| ||||||||| || ||||||| || |||||||| || ||||||||
Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284
>seq404
Length=684826
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| || ||||| ||||| | ||| || | | || |||| ||| |||||
Sbjct 507000 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGCTTGCCG 506941
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
|| |||| | | ||| ||||| ||| | |||||||||||| ||||| ||||
Sbjct 506940 GCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTC 506881
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || || ||||| ||| | ||| ||||| ||||| || || ||
Sbjct 506880 ACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTC 506821
Query 21159 TTGACAAATATTTGCAT 21175
||||| || ||||||||
Sbjct 506820 TTGACGAAGATTTGCAT 506804
>seq906
Length=301086
Score = 84.2 bits (92), Expect = 2e-11
Identities = 134/192 (70%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 29101 GGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCA 29160
||| ||||| | ||| ||| | || || ||||| ||||| |||||||| | ||||
Sbjct 5350 GGCATGTTGTTCCCAGGGCTCATCATCATCATCCCAGTCCTTGAGACCGCCACCACAGCT 5409
Query 29161 AAAGCAC----CGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACT 29216
||| ||| |||| || ||| || || || ||||| || ||||||||||| |
Sbjct 5410 AAAACACTTAACGCGA----TCTCCCACACCGGTATAGAAGAAACCAGCCTCGGCCAATT 5465
Query 29217 CTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGCTT 29276
|||||| ||||| |||| | ||||| || ||||| | ||||| ||| || | ||
Sbjct 5466 GTTCGGGACGCTGCTTCATGTTTCTTGGCCATTCGGCAAAAGAGCGCAGACGAGCTGTTT 5525
Query 29277 CCGTGGCATACT 29288
| | |||||||
Sbjct 5526 CAATAGCATACT 5537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422197228448072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |