Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1094 104 2e-17 seq404 89.7 4e-13 seq906 84.2 2e-11 >seq1094 Length=241507 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||||||| ||||||||||||||||| ||||| | | Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||||| |||||||| ||| | || | | || || || || Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||| || || || | | | ||| || ||||| Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||||||||| || ||||||| || |||||||| || |||||||| Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284 >seq404 Length=684826 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| | ||| || | | || |||| ||| ||||| Sbjct 507000 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGCTTGCCG 506941 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | | ||| ||||| ||| | |||||||||||| ||||| |||| Sbjct 506940 GCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTC 506881 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || ||||| ||| | ||| ||||| ||||| || || || Sbjct 506880 ACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTC 506821 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || |||||||| Sbjct 506820 TTGACGAAGATTTGCAT 506804 >seq906 Length=301086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 29101 GGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCA 29160 ||| ||||| | ||| ||| | || || ||||| ||||| |||||||| | |||| Sbjct 5350 GGCATGTTGTTCCCAGGGCTCATCATCATCATCCCAGTCCTTGAGACCGCCACCACAGCT 5409 Query 29161 AAAGCAC----CGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACT 29216 ||| ||| |||| || ||| || || || ||||| || ||||||||||| | Sbjct 5410 AAAACACTTAACGCGA----TCTCCCACACCGGTATAGAAGAAACCAGCCTCGGCCAATT 5465 Query 29217 CTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGCTT 29276 |||||| ||||| |||| | ||||| || ||||| | ||||| ||| || | || Sbjct 5466 GTTCGGGACGCTGCTTCATGTTTCTTGGCCATTCGGCAAAAGAGCGCAGACGAGCTGTTT 5525 Query 29277 CCGTGGCATACT 29288 | | ||||||| Sbjct 5526 CAATAGCATACT 5537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422197228448072