Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq404 107 2e-18 seq1094 87.8 1e-12 >seq404 Length=684826 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || ||||| || || || ||||| ||| ||||||| | Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| |||||| ||||||||||| | ||| |||||| Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| |||||||| ||||||||| || || | || ||||| Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || |||||||| || || || ||||| | || | || ||||| Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGTCTTCGCGGAGG 509464 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||||||| | || ||||| ||||| ||||| || || ||| ||||| | Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || ||||||||| | ||| ||||||| Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | || || || ||||| ||||||||||| || || |||| || || Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| |||||||| || || |||| |||| |||| || || Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGTCCTACGTCTACGTGGTGG 506802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||| | || ||||| || ||||| ||||| || || |||||| Sbjct 506117 AATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCC 506176 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | || || ||| ||||||||||| | || |||| Sbjct 506177 TCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGAT 506236 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | | |||||||| || ||||| |||||||| || || ||||||| Sbjct 506237 CAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTAT 506296 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||||||||| ||||| |||| | || |||| || || Sbjct 506297 AATATCCAAAAGGAATCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 506346 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || |||| || |||||||| || ||| ||||| | Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| ||||||||||| | ||| ||| ||| Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | ||||| || ||||| |||||||||||| ||| || | || ||||| Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || || || |||||||| || || Sbjct 509190 ATCCAGAAAGAATCTACCCTCCA 509212 >seq1094 Length=241507 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || || |||| || | || || |||||||||||| || || || Sbjct 166285 AAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCC 166226 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || ||||| ||||| || ||||||||| | || ||| Sbjct 166225 TTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGA 166166 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||||||| | | |||||||| |||||||||||||| ||| || || | || || Sbjct 166165 TCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTA 166106 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| ||||||||||| || ||| | || |||| Sbjct 166105 CAACATTCAAAAGGAGTCGACTTTGCATTTGGT 166073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410736510691388