Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq305 217 2e-51 seq404 131 2e-25 seq1094 102 8e-17 seq1431 86.0 6e-12 >seq305 Length=710094 Score = 217 bits (240), Expect = 2e-51 Identities = 442/650 (68%), Gaps = 20/650 (3%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| || || ||||| || ||||| ||||| ||||| || || | | |||| Sbjct 409082 AGGCTGAGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACT 409023 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||||| | | ||||| || | ||||||| || ||| |||| || || || | Sbjct 409022 GGGAGAAACTCACAGACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTG 408963 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || ||| ||||| || || |||||||| |||||| | || |||| |||||||| || Sbjct 408962 CCTCCGATGGCATAGTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAA 408903 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | || || || |||||||| ||||| ||||| || |||||||| || ||||||||||||| Sbjct 408902 CTGAAGCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGT 408843 Query 116895 ATTCGACCCTCATCGACACGTACGT--GCGCTCTT--CGGAGGAGAAGCTCCGTTTGTTG 116950 | | || || ||||| || | | || | | | | ||| ||| || Sbjct 408842 ACAGCATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAA----TATTTATTC 408787 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG--A 117008 || ||||| || || ||||| || ||| || || || ||||| || ||| | Sbjct 408786 AATGCCATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATA 408727 Query 117009 TCGCCGGCAGAGAGGCCGC---CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 || || || | || || || || || | | || || || || || || | Sbjct 408726 TCATCG-----GATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAG 408672 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || | ||||| |||||||| ||| |||| || ||| | |||||||| ||||| |||| Sbjct 408671 GCATATTCTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGC 408612 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 ||||| | || ||| ||||||||| || || | ||||| ||| ||||||| || |||| Sbjct 408611 CCGGCTTAACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTG 408552 Query 117186 CCTGT-TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244 |||| ||| |||| ||| || |||||||| || ||| | || ||| ||||| Sbjct 408551 -CTGTATTGATGTTTAAGTATCTGGTGCAGAAGCCCAGCAGAGAACGTATCATTGAGATA 408493 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC 117294 | | || ||||| ||||| ||| ||||| || ||||| |||| Sbjct 408492 ATAAGAGAAGCGGTTAAAATCGAACAGGAATTCCTTACAGAAGCATTGCC 408443 >seq404 Length=684826 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||||||||||||| |||| ||||| | | Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | || | || |||| ||||| || ||||| ||| | ||||| Sbjct 506864 GACACCATCGAAAACG-TGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 506922 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | ||| ||||| ||| |||| || | || || || ||||||||| Sbjct 506923 ACAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAA 506982 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || ||| |||| ||||| Sbjct 506983 CATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCG 507018 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || ||||||||||| | || |||||| | || Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | ||||||| || ||||| ||||| ||| | ||||| Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| ||||| || |||| || | ||||| | ||||||||| Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| || | || || ||| |||| Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGT 509218 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || || || | || || ||| || | Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||||| ||||||| || ||||| ||||| ||| | || ||| Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || ||||||||| |||| || | ||||| | ||||||||| Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || ||| | ||| Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTG 509447 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| | || || |||||||||||| | || || || | | Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | ||||||| |||||||| || ||||| | ||||| Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| ||||| || |||| ||| || | || ||||| Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || || || || | || ||||| | || |||||| Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCGC 506563 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || ||||||||||| | || |||||| | || Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||||| |||| | || |||| ||||| || || || ||| | || || Sbjct 508842 GATACCATTGAAAACG-TCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCA 508900 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || |||||| |||| || | || || | || || || Sbjct 508901 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAA 508960 Query 40869 CATCCAGAAGGA 40880 |||||||| || Sbjct 508961 TATCCAGAAAGA 508972 >seq1094 Length=241507 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || || || || || || || || |||||||| ||| | || || || Sbjct 166286 GAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGC 166227 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||||| | ||| |||||| ||||| | |||||||| || ||||| | | Sbjct 166226 CTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAG 166167 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || ||||| | |||| || |||||||| |||| || | |||||| | |||| Sbjct 166166 ATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACT 166107 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||| || |||||| | || ||||| Sbjct 166106 ACAACATTCAAAAGGAGTCGACTTTGCAT 166078 >seq1431 Length=173026 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| | |||||||| ||||| || | || || || | Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || |||| ||||||||||| || || | || Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | || | || || |||||||| || || | || || | |||||| Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||| || ||||| | ||||| ||| |||| ||||| ||| | || |||| Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGGCG 151322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515141646629920