Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq305 217 2e-51
seq404 131 2e-25
seq1094 102 8e-17
seq1431 86.0 6e-12
>seq305
Length=710094
Score = 217 bits (240), Expect = 2e-51
Identities = 442/650 (68%), Gaps = 20/650 (3%)
Strand=Plus/Minus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||| ||||| || || ||||| || ||||| ||||| ||||| || || | | ||||
Sbjct 409082 AGGCTGAGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACT 409023
Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774
||||| | | ||||| || | ||||||| || ||| |||| || || || |
Sbjct 409022 GGGAGAAACTCACAGACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTG 408963
Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834
|| ||| ||||| || || |||||||| |||||| | || |||| |||||||| ||
Sbjct 408962 CCTCCGATGGCATAGTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAA 408903
Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894
| || || || |||||||| ||||| ||||| || |||||||| || |||||||||||||
Sbjct 408902 CTGAAGCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGT 408843
Query 116895 ATTCGACCCTCATCGACACGTACGT--GCGCTCTT--CGGAGGAGAAGCTCCGTTTGTTG 116950
| | || || ||||| || | | || | | | | ||| ||| ||
Sbjct 408842 ACAGCATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAA----TATTTATTC 408787
Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG--A 117008
|| ||||| || || ||||| || ||| || || || ||||| || ||| |
Sbjct 408786 AATGCCATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATA 408727
Query 117009 TCGCCGGCAGAGAGGCCGC---CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065
|| || || | || || || || || | | || || || || || || |
Sbjct 408726 TCATCG-----GATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAG 408672
Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125
|| | ||||| |||||||| ||| |||| || ||| | |||||||| ||||| ||||
Sbjct 408671 GCATATTCTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGC 408612
Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185
||||| | || ||| ||||||||| || || | ||||| ||| ||||||| || ||||
Sbjct 408611 CCGGCTTAACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTG 408552
Query 117186 CCTGT-TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244
|||| ||| |||| ||| || |||||||| || ||| | || ||| |||||
Sbjct 408551 -CTGTATTGATGTTTAAGTATCTGGTGCAGAAGCCCAGCAGAGAACGTATCATTGAGATA 408493
Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC 117294
| | || ||||| ||||| ||| ||||| || ||||| ||||
Sbjct 408492 ATAAGAGAAGCGGTTAAAATCGAACAGGAATTCCTTACAGAAGCATTGCC 408443
>seq404
Length=684826
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | || ||||||||||||||| |||| ||||| | |
Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | ||||| | || | || |||| ||||| || ||||| ||| | |||||
Sbjct 506864 GACACCATCGAAAACG-TGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 506922
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || | || | ||| ||||| ||| |||| || | || || || |||||||||
Sbjct 506923 ACAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAA 506982
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||| | || || ||| |||| |||||
Sbjct 506983 CATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCG 507018
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || ||||||||||| | || |||||| | ||
Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | ||| | || | ||||||| || ||||| ||||| ||| | |||||
Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| ||| ||||| || |||| || | ||||| | |||||||||
Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||| || | || || ||| ||||
Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGT 509218
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | || || || || || || | || || ||| || |
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | ||| |||||| ||||||| || ||||| ||||| ||| | || |||
Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| || ||||||||| |||| || | ||||| | |||||||||
Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||| | || || ||| | |||
Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTG 509447
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || |||||||| | || || |||||||||||| | || || || | |
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | ||| | || | ||||||| |||||||| || ||||| | |||||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | || | ||| ||||| ||||| || |||| ||| || | || |||||
Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|| || || || | || ||||| | || ||||||
Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCGC 506563
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || ||||||||||| | || |||||| | ||
Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841
Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | || ||||| |||| | || |||| ||||| || || || ||| | || ||
Sbjct 508842 GATACCATTGAAAACG-TCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCA 508900
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| || |||||| |||| || | || || | || || ||
Sbjct 508901 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAA 508960
Query 40869 CATCCAGAAGGA 40880
|||||||| ||
Sbjct 508961 TATCCAGAAAGA 508972
>seq1094
Length=241507
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744
|||||||||| || || || || || || || || |||||||| ||| | || || ||
Sbjct 166286 GAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGC 166227
Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
| |||||| | ||| |||||| ||||| | |||||||| || ||||| | |
Sbjct 166226 CTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAG 166167
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
| || ||||| | |||| || |||||||| |||| || | |||||| | ||||
Sbjct 166166 ATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACT 166107
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||||| || |||||| | || |||||
Sbjct 166106 ACAACATTCAAAAGGAGTCGACTTTGCAT 166078
>seq1431
Length=173026
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || ||||| | |||||||| ||||| || | || || || |
Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| || | | ||| | |||| || |||| ||||||||||| || || | ||
Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|| ||||| | || | || || |||||||| || || | || || | ||||||
Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
||||| || ||||| | ||||| ||| |||| ||||| ||| | || ||||
Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGGCG 151322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515141646629920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |