Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq326 168 5e-37 >seq326 Length=702362 Score = 168 bits (186), Expect = 5e-37 Identities = 414/624 (66%), Gaps = 3/624 (0%) Strand=Plus/Minus Query 97007 TTGGGAAA-GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACA 97065 |||||||| || ||||| | || | | ||||| | | | |||| ||| ||| | Sbjct 510215 TTGGGAAAAGGTCTGGGTTTGCGTTTTAATTGCTCCCTCAATGGTTCAACGTGGTTCTTA 510156 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || | || ||||| || || ||||| | ||| || ||||| || |||| | ||| Sbjct 510155 TATACATGGGCATCGCCCAATGTGTGTACAAAATCACCAGGCTTTAGGCCAGTTATGTGG 510096 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || |||||| | || || | | ||| |||||||| || || || |||| ||||| Sbjct 510095 GCAATCATATAGGTCAACAAGGCATATGAGGCAATGTTGAATGGTACTCCTAAGCCCATG 510036 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 || || | ||||||||| ||||| || |||| |||| ||||||||||| | Sbjct 510035 TCGGCACTGCGTTGATATAATTGACAAGATAGCTCACCATTGGCAACATAAAACTGGGCC 509976 Query 97246 AATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATC 97305 || ||||||||| ||||| ||||| | || | || | | ||||||||| ||||| Sbjct 509975 AAGCAATGACAGGGAGGCAAAGCCATCTGCGGCATGTCCATGGGATTCCAAGCGGACATC 509916 Query 97306 AACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCA 97365 | || | ||| || || || ||| |||| |||| ||| | ||| |||| ||| || Sbjct 509915 ATGATACGTCTGTCATCGGGATTAGTGCGTATTGTATGAATAACCTGTTTTAGTTGGTCC 509856 Query 97366 ACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCAT 97425 || || || |||| || | | | | | || | ||||||||||| | ||| Sbjct 509855 ACACCCTCGTTGTCATAGTTATCGTGGCAAGTTCGGTACTTAGCTCCAAAATGACGCCAC 509796 Query 97426 TGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCT 97485 || || ||||| ||||| || | || ||||| |||| ||| |||||| |||||||| Sbjct 509795 TGAAAACCATATACAGGACCCAAATCACCTTCCTCTCGATCCGTGAAACCGAGCTTATCC 509736 Query 97486 AAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAGCTCTTT 97544 ||| || | | | || ||||||| ||||| | | | | ||||| ||||| Sbjct 509735 AAAAAGTCGCGTGTGCTGTTGCCATCCCATATGTGAATATTCTTGTCCTGCAGAATCTTT 509676 Query 97545 GCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATAC 97604 || | || | || || ||||| | | ||||| ||||| | ||||| || || Sbjct 509675 GC-ATTGGTGCAGCCATGTATGAACCAAATAAGCTCTTCTGCAACAGCCCTCCAGAAGAC 509617 Query 97605 TCTCTTAGTTGTTAAGAGAGGAAA 97628 | |||||| || | | |||||| Sbjct 509616 CCGCTTAGTGGTGAGCAAAGGAAA 509593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346733105329940