Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq404 96.9 2e-15 >seq404 Length=684826 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| | || |||||||||||||| |||||| Sbjct 506994 TCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAA 506935 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | ||||| ||||| ||| | || |||||||| ||| || ||||| | | Sbjct 506934 ATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATC-TTGGCTTTCACGTT 506876 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||||| || | |||||||||||||| || | || || || Sbjct 506875 TTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGAC 506816 Query 34378 AAAGATCTGCAT 34389 ||||| ||||| Sbjct 506815 GAAGATTTGCAT 506804 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| |||| || | || ||||| |||||||| ||||| Sbjct 509201 TTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAA 509142 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | || || ||||| ||| | || || || || || ||| ||||| | || Sbjct 509141 GATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGAAT-TTTAGCTTTCACAT 509083 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||||| | |||||| || | ||||||||||| || || || || || | Sbjct 509082 TTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGA 509023 Query 34377 CAAAGATCTGCAT 34389 | ||||| ||||| Sbjct 509022 CGAAGATTTGCAT 509010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323024585347520