Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq305 259 4e-64 >seq305 Length=710094 Score = 259 bits (286), Expect = 4e-64 Identities = 487/707 (69%), Gaps = 12/707 (2%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| || |||||||| ||||||| |||||||||||| ||||| || || || || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | ||||||||| | || | | ||| || ||||||||||| | ||||| || | Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 16189 TACTACACTATTTAACGGAGGGTTTA---ATAAG-TGTTTAAACATTA-TACAAGCAAAA 16243 | ||| | | | | ||| || | || | |||||||| | |||| |||||| Sbjct 408502 GA-TACGTTCTCT---GCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAA 408556 Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303 ||||||||||| |||||||| | ||| | |||||| || ||||| | || |||||| Sbjct 408557 TCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATT 408616 Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363 || || ||||| || | ||| || || | |||||| || |||||||| |||||| Sbjct 408617 AGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCA 408676 Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttt 16423 || || ||||| || | | || ||||| | | | | | ||||||| Sbjct 408677 ACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGAC 408736 Query 16424 ttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483 |||||||| |||||| ||||||| ||| | || || ||||| |||||||| Sbjct 408737 AAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATAT 408796 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543 | || | | |||| |||||| || || || || | || |||||||| || ||| Sbjct 408797 TCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGA 408856 Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 | ||||||||| || ||||| || ||||| ||||| | ||||| | || ||| || || Sbjct 408857 ACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCT 408916 Query 16604 -GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 ||| |||| || || | | || || |||||||| |||||| || ||||| || || Sbjct 408917 TGAG-AAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGC 408975 Query 16663 AAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATC 16722 | | || ||| |||| | |||| || |||| ||||| ||||||||| | ||| Sbjct 408976 CAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATC 409035 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 ||| || | ||| || || || ||||||||||| || || |||||| Sbjct 409036 TTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462442380381200