Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq305 259 4e-64
>seq305
Length=710094
Score = 259 bits (286), Expect = 4e-64
Identities = 487/707 (69%), Gaps = 12/707 (2%)
Strand=Plus/Plus
Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128
||| || |||||||| ||||||| |||||||||||| ||||| || || || ||
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188
|| | ||||||||| | || | | ||| || ||||||||||| | ||||| || |
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 16189 TACTACACTATTTAACGGAGGGTTTA---ATAAG-TGTTTAAACATTA-TACAAGCAAAA 16243
| ||| | | | | ||| || | || | |||||||| | |||| ||||||
Sbjct 408502 GA-TACGTTCTCT---GCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAA 408556
Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303
||||||||||| |||||||| | ||| | |||||| || ||||| | || ||||||
Sbjct 408557 TCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATT 408616
Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363
|| || ||||| || | ||| || || | |||||| || |||||||| ||||||
Sbjct 408617 AGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCA 408676
Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttt 16423
|| || ||||| || | | || ||||| | | | | | |||||||
Sbjct 408677 ACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGAC 408736
Query 16424 ttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483
|||||||| |||||| ||||||| ||| | || || ||||| ||||||||
Sbjct 408737 AAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATAT 408796
Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543
| || | | |||| |||||| || || || || | || |||||||| || |||
Sbjct 408797 TCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGA 408856
Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603
| ||||||||| || ||||| || ||||| ||||| | ||||| | || ||| || ||
Sbjct 408857 ACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCT 408916
Query 16604 -GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662
||| |||| || || | | || || |||||||| |||||| || ||||| || ||
Sbjct 408917 TGAG-AAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGC 408975
Query 16663 AAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATC 16722
| | || ||| |||| | |||| || |||| ||||| ||||||||| | |||
Sbjct 408976 CAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATC 409035
Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769
||| || | ||| || || || ||||||||||| || || ||||||
Sbjct 409036 TTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462442380381200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |