Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq326 143 2e-29
>seq326
Length=702362
Score = 143 bits (158), Expect = 2e-29
Identities = 377/569 (66%), Gaps = 20/569 (4%)
Strand=Plus/Plus
Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG-- 20272
|| || |||||||||||||| ||||| ||||| ||| | |||||||||||| | ||
Sbjct 509764 GAAGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTACCGA 509823
Query 20273 --TTGACATGAACACAAATTATTTTGGACAAGGAG----TAGATCAATTACAAAATGTTA 20326
||| || || || ||| ||||| ||| | || ||| || || | ||||
Sbjct 509824 ACTTGCCACGATAAC----TAT----GACAACGAGGGTGTGGACCAACTAAAACAGGTTA 509875
Query 20327 TTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTA 20386
|| || ||| || || || | |||||| | || || | | ||| ||||| | |
Sbjct 509876 TTCATACAATACGCACTAATCCCGATGACAGACGTATCATGATGTCCGCTTGGAATCCCA 509935
Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATG-CCAATTTTACGTTGCT 20445
|| |||| |||||||||||||| |||||| |||| | ||| ||||| |||||
Sbjct 509936 TGGACATGCCGCAGATGGCTTTGCCTCCCTGTCAT-TGCTTGGCCCAGTTTTATGTTGCC 509994
Query 20446 AATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCT 20505
||| ||| | || |||||| | |||||||| || || ||||| | || || ||
Sbjct 509995 AATGGTGAGCTATCTTGTCAATTATATCAACGCAGTGCCGACATGGGCTTAGGAGTACCA 510054
Query 20506 TTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAA 20565
||||| ||||| ||||| || | || ||||||||||| || | || | ||||
Sbjct 510055 TTCAACATTGCCTCATATGCCTTGTTGACCTATATGATTGCCCACATAACTGGCCTAAAG 510114
Query 20566 ACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCT 20625
| ||||| || || ||||| | || || || ||| | || || || | |||||
Sbjct 510115 CCTGGTGATTTTGTACACACATTGGGCGATGCCCATGTATATAAGAACCACGTTGAACCA 510174
Query 20626 TTAAAATTACAGTTAACACG-ACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAAC 20684
|| | || |||| ||| | | ||| | | ||||||| | | || | || |
Sbjct 510175 TTGAGGGAGCAATTAAAACGCAAACCCAGACCTTTTCCCAAAT-TGATAATCAAACGTAA 510233
Query 20685 TGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744
|| |||||||| | || |||||| ||| ||||| | | | | ||| || || |
Sbjct 510234 AGTAGAAGATATTGAGGACTTTAAATTTGAAGATTTCGAAATTGTCGATTACAAACCATA 510293
Query 20745 TAATTCAATTCCAATGGAAATGTCTGTTT 20773
| ||||| |||||||||| ||||||
Sbjct 510294 TCCAAAAATTCAAATGGAAATGGCTGTTT 510322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399125415007690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |