Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq404 104 2e-17
seq1094 98.7 8e-16
>seq404
Length=684826
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| |||| ||| | || |||| || || ||||||||
Sbjct 506995 CTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAA 506936
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| ||||||||||| || || | || |||||||| ||| || || ||
Sbjct 506935 AATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTCACGTT 506876
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | ||||| | ||| || || | ||| || || ||||| |||| ||||| ||
Sbjct 506875 TTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGAC 506816
Query 45325 AAAGATTTGCAT 45336
|||||||||||
Sbjct 506815 GAAGATTTGCAT 506804
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|||||||| |||| || || || ||||| ||||| || || | || ||||
Sbjct 506559 AATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCT 506500
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || || || ||||| ||||| ||||||||||| || || | || || |||||
Sbjct 506499 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 506440
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|||||| ||||| | | | | || | ||| ||||||| ||| || ||
Sbjct 506439 TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTT 506380
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || |||| || || |||||||||||||||
Sbjct 506379 TTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
>seq1094
Length=241507
Score = 98.7 bits (108), Expect = 8e-16
Identities = 156/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186
|||||| |||| || |||||| |||||||||||||| || |||| | || ||
Sbjct 166072 TACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTC 166131
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| |||||| || || || ||||| || ||||| || || || | ||| || |||||
Sbjct 166132 CAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG 166191
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
||||| ||| || | | |||| | ||| ||||||| |||||| || ||
Sbjct 166192 GATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTT 166251
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTCAATACA 45350
|| || || ||||| |||||||| ||||| || | ||| |||
Sbjct 166252 ACCGGTTAGGGTCTTGACAAAGATCTGCATTTTTCTACAAAACA 166295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395017218022882
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |