Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq305 233 2e-56 >seq305 Length=710094 Score = 233 bits (258), Expect = 2e-56 Identities = 383/544 (70%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 14186 AGATGTTTAAAAATTAA-ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 14244 |||| ||||| || || ||| |||||||||||||| | || || || | || || Sbjct 408530 AGATACTTAAACATCAATACA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAG 408588 Query 14245 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 14304 ||||| || |||||||| || ||||| | || ||||| || ||||| || || | || Sbjct 408589 CTCGTTGGAGAATGTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGC 408648 Query 14305 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 || ||| |||||||| || ||||| |||||||| ||||||| ||||| ||||| Sbjct 408649 AAAACTGCCGCTGAAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAA 408708 Query 14365 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14424 || | ||||||||| |||||| |||| |||| |||||| | Sbjct 408709 ATTAGCAGAATCCGATGATATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGG 408768 Query 14425 CATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC 14484 ||| |||||||| ||||| ||||||| ||| | | | | | ||| || || || Sbjct 408769 CATAGTTTCAATGGCATTGAATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTC 408828 Query 14485 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 |||||| | ||| |||||||| ||||| | || |||||||| ||||| || ||||| || Sbjct 408829 AATAAGAATGCTGTACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAA 408888 Query 14545 ACATCTAGCTTCTGACCATTGTACCTCT-GAGTAAAATCTTTCGGCCAAATTTTCATTAA 14603 || | ||||| | ||| |||||| ||| ||||||| ||| | | ||| ||||||| Sbjct 408889 GCAGCGGGCTTCAGTTACTTGCACCTCTTGAG-AAAATCTCTCGACAAGATTCTCATTAA 408947 Query 14604 CTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14663 |||| ||||| || ||||| || ||||| | | ||| || ||| || ||||| Sbjct 408948 CTATGCCATCGGAGGCAGCAAAGAAAGCCAACACATGGGAAATGAAATAT--CT-TTCAT 409004 Query 14664 TG---CTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14720 || ||||||| | ||| || | | ||| ||||| ||||| ||||| ||||| |||| Sbjct 409005 TGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCC 409064 Query 14721 AAAA 14724 |||| Sbjct 409065 AAAA 409068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482272994928560