Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq404 116 3e-21
seq1094 102 6e-17
>seq404
Length=684826
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| |||| || ||||||||||| || || ||||||||||| | |
Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || ||||||||| |||||||| ||| |||| | | ||| ||||| |||
Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||| ||||| ||||| |||||| | | | | || ||| ||| || |
Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | || || | || || ||||| || || || |||||||||||
Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | ||| || | || || || |||||||| || ||||||||||| | |
Sbjct 509236 CCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 509177
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || |||||||||||| ||||| || |||| | | |||||| || |||
Sbjct 509176 AAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGA 509117
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||| ||||| ||||| | || || || | | | | ||| || || |||
Sbjct 509116 ATGCCTTCTTTATCTTGAATTT-TAGCTTTCACATTTTCGATAGTATCGGATGGTTCGAC 509058
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | |||||| |||| || |||| || || || || ||||||||
Sbjct 509057 TTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | || |||| || ||||| ||||||||||||||||| ||||||| |
Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | ||||||||||| ||||| || | || | | |||||||| |||
Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||| || || ||||| ||| || | | | | ||| ||| || || |
Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||| |||| || || ||||| || || || ||||||||
Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || || || || ||||||||||||| || ||| || ||||||||| ||
Sbjct 507006 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGC 506947
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| || | || | | ||||| || ||| | ||||||||| || ||| | |
Sbjct 506946 TTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCT-T 506888
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| || || | | | | ||||| |||||| ||| | ||||||| ||||||| ||
Sbjct 506887 GGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGT 506828
Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325
||| || || || || ||||||||
Sbjct 506827 CAAGGTCTTGACGAAGATTTGCAT 506804
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175
||||| || | ||| |||||||||||||| ||||| || | || |||| | |||||
Sbjct 506557 TACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTC 506498
Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235
| || ||||| || | || | || ||||| || || | ||||| || ||
Sbjct 506497 AAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG 506438
Query 18236 AATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294
||||| | |||| | | | | ||| || ||| ||||| || | ||||||| |||
Sbjct 506437 AATTT-TGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTT 506379
Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| || ||||||||||||||||| ||||||||
Sbjct 506378 TACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
>seq1094
Length=241507
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
||||||| || | || || || ||||||||||||||||| | || || || |||
Sbjct 166070 AGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCC 166129
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||||||||||||| ||| |||| | | ||||||||| || | ||||| || ||
Sbjct 166130 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 166189
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|||| |||||| | | ||| |||||| ||||| || | ||| ||| ||
Sbjct 166190 TGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTT 166249
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329
|| ||||| | || || ||||| || |||||||||
Sbjct 166250 TTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTT 166285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379288326763290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |