Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1090 477 9e-130 seq404 125 6e-24 seq1094 102 7e-17 >seq1090 Length=275775 Score = 477 bits (528), Expect = 9e-130 Identities = 1382/2117 (65%), Gaps = 41/2117 (2%) Strand=Plus/Minus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 || || || || ||||| || || || || ||||| || | | |||||||||||||||| Sbjct 261582 TCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTC 261523 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAG 22228 || || || ||||| | || |||||||| || |||||||| || || | ||| | Sbjct 261522 TTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCG 261463 Query 22229 TCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATA 22288 ||| | | |||||| || ||||| || || || || ||||| ||||| || ||||| Sbjct 261462 GCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATT 261403 Query 22289 TTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAAC 22348 || || || | || ||||||||||| || ||||| || | | || ||| Sbjct 261402 TTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTG 261343 Query 22349 GGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTA 22408 || || ||||| | || | ||| || | || || |||||| || Sbjct 261342 GGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCC 261283 Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 || | ||| | ||| ||||||||||||| | || |||| | || || | | || Sbjct 261282 TCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAAT 261223 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | || |||||| |||||||| || ||| |||||||||||| ||||||| Sbjct 261222 TCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTG 261163 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || |||| || || || |||||||| || ||||| || |||| || ||||| || | Sbjct 261162 TTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGT 261103 Query 22589 AAGCCGTGCTTTGAAAT--TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCG 22646 | || || || | ||| ||| || | | ||| | ||| ||||| ||||||| || Sbjct 261102 ACACCATGTTTGGCAATTCTTTCCTTTAGGGCA--GCCCAATCCCAGAGATCGGTGGG-- 261047 Query 22647 TCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACG 22706 ||| |||| |||||| || ||||| | | || ||| | ||||| ||| |||| Sbjct 261046 -CACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACG 260988 Query 22707 TTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATA 22766 |||| || ||||||| | | || | ||| || || || ||||| || || || || | Sbjct 260987 TTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAA 260928 Query 22767 TAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCA 22826 |||| || || |||| | ||||||| | ||| | |||||||||| || ||||| Sbjct 260927 TAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCA 260868 Query 22827 TCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGAT 22886 | | | | | || || | |||||| || || || || || || || | | | |||| Sbjct 260867 TGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGAT 260808 Query 22887 TCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTC 22946 | || | | ||||| ||| ||||| | || ||| || || |||| | || | Sbjct 260807 TAGATTTTCTGGCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGATTGC 260748 Query 22947 TGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTAC-- 23004 | ||| | ||| | || | |||||| ||| | | | | Sbjct 260747 GCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTC--AAAAGTTTTTTCGGGCGT 260690 Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 |||||| |||| | | || ||||| | ||||| || || | || || | | Sbjct 260689 CACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCTGA 260630 Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 || || || ||||| || || | |||||| || || || ||||| | ||| || || Sbjct 260629 ATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATT 260570 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 ||||| ||||| || || ||||| | |||||||| || || || || || || || || Sbjct 260569 ACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGA 260510 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC--TGCCTTCT 23242 || || || || ||| | | ||| || | | | | | || | |||| | Sbjct 260509 TTCTATAATGGCAAACCAAAGCGCCTGCGCCTTA--ATGGTTCTGTTAGCTTTGCCGGCC 260452 Query 23243 TCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGC 23302 | ||||| |||| ||| | | ||||||||| |||| | || || || || Sbjct 260451 TTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGA 260392 Query 23303 GATTGCATCGGACACATGAGACTCCACATTG-AGTCATTTTCAACGCGTCTCATAAAAAG 23361 ||| |||||||| || ||| || | || | ||| || |||| |||||| | Sbjct 260391 CATTTGTGAGGACACATTAGGGACCA-ATCGCCGTTTTCTTCCACACGTCGCATAAACAA 260333 Query 23362 ATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTT 23421 ||| |||||||| ||||| ||||| || || | ||| || ||| ||||||||||| || Sbjct 260332 ATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATT 260273 Query 23422 CTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAA 23481 |||||| ||||||||||| || || | ||||| |||||| || || | ||| | |||||| Sbjct 260272 CTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAA 260213 Query 23482 CGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCT 23541 || || || | || || |||||||| ||||| || || || ||| | ||||| Sbjct 260212 TGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCT 260153 Query 23542 TAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA---CCTTT 23598 || ||| ||||| | ||| ||||| | || ||| || | | ||| || || Sbjct 260152 TAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTA---TGGAAGTTCCCTT 260096 Query 23599 TGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 || |||| | || || | || || || ||||| | ||||| || ||||| || || Sbjct 260095 AGCGCGAATGCAATGGACATTGATTCCAATACCTCCAGCTGATTTGGAAATCATAGCACA 260036 Query 23659 TTGTTTCAGAGTGTCGTAGATGCCCTCGAT---GCTGTCCTCTTTGGTCGCGACCAAGAA 23715 || | || || | | |||||||| || | | | ||||| | | ||| Sbjct 260035 CTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTC---AAGAGGAA 259979 Query 23716 ACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGT 23771 ||| ||||||| ||| || ||| || || || | |||| ||| || || | Sbjct 259978 ACAAGAAGACAATTGTGGACGATTT----GTGGCTGCAGCAAACAATGTGGGCGATGCAT 259923 Query 23772 GCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831 | |||||||| | | |||| || || || || ||||| | ||| |||||||||| Sbjct 259922 GGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTC 259863 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGT 23891 | || ||||| | ||| || ||||||| ||| | ||| || | ||| | | || | Sbjct 259862 CATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCAT 259803 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 | ||||| || |||||||| |||| | || ||||||||||| |||| ||| ||| | Sbjct 259802 TCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAAT 259743 Query 23952 CACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAAT 24011 |||| |||| || |||||||| || | || | || ||| || | || |||| Sbjct 259742 CACGGTCGTATACAATGGCCGAGTTGAGGCGCTCCGAATTTTTCATGACCACATTATAAT 259683 Query 24012 GAAAATTCGATATCATCG--GCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCATACAT 24069 |||||| || ||||| | || ||| || |||| | || | || || Sbjct 259682 GAAAATCGGAAATCATTGATGCCCTTT--GTCCAGTCTCGTCACTGACGAAATGATGCAG 259625 Query 24070 ATCGATAATGACATCGAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAA 24129 || | ||||| || | ||| | |||||| || |||||||| || ||||| || | Sbjct 259624 GTCACTGATGACTTCCGAGAAAACCTTTTTAGTTTCTTTGTGCAAGTTGGACACAGCAAT 259565 Query 24130 TCTAGCCGCAAGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGC 24189 | |||||| | ||| | ||| |||| ||||| | || | | || || || || || Sbjct 259564 GCGAGCCGCCAACAAAGCATAATCGGCATGATTTGTTGTGAGTGTGGCAGCTGTTTCTGC 259505 Query 24190 GATTAGATTGTCCAATT 24206 | | ||||||||||| Sbjct 259504 GGCCAAATTGTCCAATT 259488 >seq404 Length=684826 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| || ||||| ||||| | || || ||||| ||| Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | || ||||||||||| | || || || ||| Sbjct 508842 GATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 508901 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| |||||||||||||| | || || |||||||| Sbjct 508902 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAAT 508961 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||||||||| || || ||||||| Sbjct 508962 ATCCAGAAAGAATCGACCCTCCACTTGGTACT 508993 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| | || || ||||| ||||| | || |||||||| || Sbjct 506575 CATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTC 506634 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | |||| || || | ||| ||||| ||||| | || || || || Sbjct 506635 TGATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCA 506694 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||||||||| || ||||||||| || || ||| ||||| Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAA 506754 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||||||| || || ||| |||| || Sbjct 506755 CATTCAAAAAGAATCTACACTACATTTGGTCCT 506787 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| |||||||| |||||| |||| || || || || Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || ||| | || |||||||||||| | || || ||||| Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||| ||||| ||||||||||| | || || ||| || ||| Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAAC 506983 Query 31373 ATTCAAAAAGAATCGACTCTTCAT 31396 || || || || || || || ||| Sbjct 506984 ATCCAGAAGGAGTCTACCCTCCAT 507007 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || ||||| || |||| || ||||| |||||| | || ||||| || || Sbjct 506347 CATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTC 506406 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| || ||| | ||| ||||| ||||| | || || ||||| Sbjct 506407 TGATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCA 506466 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || ||||||||||| ||| | |||||| || || ||||| || Sbjct 506467 ACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAA 506526 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||||||||||||| || | ||| ||||| Sbjct 506527 TATTCAAAAAGAATCTACATTGCATTTGGTA 506557 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||| || || || || || | || || ||||| || Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| ||||| | ||| || || |||||| | || || || ||| Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || || ||||||||||||||||| | || || || || ||| Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||| || || ||| |||| ||| Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTGCTT 509450 >seq1094 Length=241507 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| || || || ||||| || ||| | || || || || Sbjct 166285 AAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCC 166226 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| | | |||| ||||| | ||| ||||| ||||| | || || || Sbjct 166225 TTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGA 166166 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || ||| | || || ||||||||||| ||||| || | || || || || Sbjct 166165 TCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTA 166106 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||| || |||||| | ||| ||||||| Sbjct 166105 CAACATTCAAAAGGAGTCGACTTTGCATTTGGTACT 166070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445699301012640