Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 477 9e-130
seq404 125 6e-24
seq1094 102 7e-17
>seq1090
Length=275775
Score = 477 bits (528), Expect = 9e-130
Identities = 1382/2117 (65%), Gaps = 41/2117 (2%)
Strand=Plus/Minus
Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168
|| || || || ||||| || || || || ||||| || | | ||||||||||||||||
Sbjct 261582 TCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTC 261523
Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAG 22228
|| || || ||||| | || |||||||| || |||||||| || || | ||| |
Sbjct 261522 TTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCG 261463
Query 22229 TCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATA 22288
||| | | |||||| || ||||| || || || || ||||| ||||| || |||||
Sbjct 261462 GCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATT 261403
Query 22289 TTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAAC 22348
|| || || | || ||||||||||| || ||||| || | | || |||
Sbjct 261402 TTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTG 261343
Query 22349 GGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTA 22408
|| || ||||| | || | ||| || | || || |||||| ||
Sbjct 261342 GGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCC 261283
Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468
|| | ||| | ||| ||||||||||||| | || |||| | || || | | ||
Sbjct 261282 TCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAAT 261223
Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528
|| || || | || |||||| |||||||| || ||| |||||||||||| |||||||
Sbjct 261222 TCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTG 261163
Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588
|| |||| || || || |||||||| || ||||| || |||| || ||||| || |
Sbjct 261162 TTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGT 261103
Query 22589 AAGCCGTGCTTTGAAAT--TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCG 22646
| || || || | ||| ||| || | | ||| | ||| ||||| ||||||| ||
Sbjct 261102 ACACCATGTTTGGCAATTCTTTCCTTTAGGGCA--GCCCAATCCCAGAGATCGGTGGG-- 261047
Query 22647 TCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACG 22706
||| |||| |||||| || ||||| | | || ||| | ||||| ||| ||||
Sbjct 261046 -CACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACG 260988
Query 22707 TTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATA 22766
|||| || ||||||| | | || | ||| || || || ||||| || || || || |
Sbjct 260987 TTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAA 260928
Query 22767 TAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCA 22826
|||| || || |||| | ||||||| | ||| | |||||||||| || |||||
Sbjct 260927 TAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCA 260868
Query 22827 TCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGAT 22886
| | | | | || || | |||||| || || || || || || || | | | ||||
Sbjct 260867 TGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGAT 260808
Query 22887 TCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTC 22946
| || | | ||||| ||| ||||| | || ||| || || |||| | || |
Sbjct 260807 TAGATTTTCTGGCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGATTGC 260748
Query 22947 TGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTAC-- 23004
| ||| | ||| | || | |||||| ||| | | | |
Sbjct 260747 GCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTC--AAAAGTTTTTTCGGGCGT 260690
Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064
|||||| |||| | | || ||||| | ||||| || || | || || | |
Sbjct 260689 CACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCTGA 260630
Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124
|| || || ||||| || || | |||||| || || || ||||| | ||| || ||
Sbjct 260629 ATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATT 260570
Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184
||||| ||||| || || ||||| | |||||||| || || || || || || || ||
Sbjct 260569 ACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGA 260510
Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC--TGCCTTCT 23242
|| || || || ||| | | ||| || | | | | | || | |||| |
Sbjct 260509 TTCTATAATGGCAAACCAAAGCGCCTGCGCCTTA--ATGGTTCTGTTAGCTTTGCCGGCC 260452
Query 23243 TCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGC 23302
| ||||| |||| ||| | | ||||||||| |||| | || || || ||
Sbjct 260451 TTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGA 260392
Query 23303 GATTGCATCGGACACATGAGACTCCACATTG-AGTCATTTTCAACGCGTCTCATAAAAAG 23361
||| |||||||| || ||| || | || | ||| || |||| |||||| |
Sbjct 260391 CATTTGTGAGGACACATTAGGGACCA-ATCGCCGTTTTCTTCCACACGTCGCATAAACAA 260333
Query 23362 ATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTT 23421
||| |||||||| ||||| ||||| || || | ||| || ||| ||||||||||| ||
Sbjct 260332 ATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATT 260273
Query 23422 CTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAA 23481
|||||| ||||||||||| || || | ||||| |||||| || || | ||| | ||||||
Sbjct 260272 CTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAA 260213
Query 23482 CGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCT 23541
|| || || | || || |||||||| ||||| || || || ||| | |||||
Sbjct 260212 TGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCT 260153
Query 23542 TAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA---CCTTT 23598
|| ||| ||||| | ||| ||||| | || ||| || | | ||| || ||
Sbjct 260152 TAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTA---TGGAAGTTCCCTT 260096
Query 23599 TGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658
|| |||| | || || | || || || ||||| | ||||| || ||||| || ||
Sbjct 260095 AGCGCGAATGCAATGGACATTGATTCCAATACCTCCAGCTGATTTGGAAATCATAGCACA 260036
Query 23659 TTGTTTCAGAGTGTCGTAGATGCCCTCGAT---GCTGTCCTCTTTGGTCGCGACCAAGAA 23715
|| | || || | | |||||||| || | | | ||||| | | |||
Sbjct 260035 CTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTC---AAGAGGAA 259979
Query 23716 ACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGT 23771
||| ||||||| ||| || ||| || || || | |||| ||| || || |
Sbjct 259978 ACAAGAAGACAATTGTGGACGATTT----GTGGCTGCAGCAAACAATGTGGGCGATGCAT 259923
Query 23772 GCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831
| |||||||| | | |||| || || || || ||||| | ||| ||||||||||
Sbjct 259922 GGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTC 259863
Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGT 23891
| || ||||| | ||| || ||||||| ||| | ||| || | ||| | | || |
Sbjct 259862 CATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCAT 259803
Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951
| ||||| || |||||||| |||| | || ||||||||||| |||| ||| ||| |
Sbjct 259802 TCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAAT 259743
Query 23952 CACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAAT 24011
|||| |||| || |||||||| || | || | || ||| || | || ||||
Sbjct 259742 CACGGTCGTATACAATGGCCGAGTTGAGGCGCTCCGAATTTTTCATGACCACATTATAAT 259683
Query 24012 GAAAATTCGATATCATCG--GCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCATACAT 24069
|||||| || ||||| | || ||| || |||| | || | || ||
Sbjct 259682 GAAAATCGGAAATCATTGATGCCCTTT--GTCCAGTCTCGTCACTGACGAAATGATGCAG 259625
Query 24070 ATCGATAATGACATCGAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAA 24129
|| | ||||| || | ||| | |||||| || |||||||| || ||||| || |
Sbjct 259624 GTCACTGATGACTTCCGAGAAAACCTTTTTAGTTTCTTTGTGCAAGTTGGACACAGCAAT 259565
Query 24130 TCTAGCCGCAAGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGC 24189
| |||||| | ||| | ||| |||| ||||| | || | | || || || || ||
Sbjct 259564 GCGAGCCGCCAACAAAGCATAATCGGCATGATTTGTTGTGAGTGTGGCAGCTGTTTCTGC 259505
Query 24190 GATTAGATTGTCCAATT 24206
| | |||||||||||
Sbjct 259504 GGCCAAATTGTCCAATT 259488
>seq404
Length=684826
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| ||||| || ||||| ||||| | || || ||||| |||
Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| |||||| | || ||||||||||| | || || || |||
Sbjct 508842 GATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 508901
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || |||||||| |||||||||||||| | || || ||||||||
Sbjct 508902 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAAT 508961
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || ||||||||||| || || |||||||
Sbjct 508962 ATCCAGAAAGAATCGACCCTCCACTTGGTACT 508993
Score = 118 bits (130), Expect = 9e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| | || || ||||| ||||| | || |||||||| ||
Sbjct 506575 CATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTC 506634
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | | |||| || || | ||| ||||| ||||| | || || || ||
Sbjct 506635 TGATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCA 506694
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||||||||| || ||||||||| || || ||| |||||
Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAA 506754
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||||||||||||| || || ||| |||| ||
Sbjct 506755 CATTCAAAAAGAATCTACACTACATTTGGTCCT 506787
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| |||| |||||||| |||||| |||| || || || ||
Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| || ||| | || |||||||||||| | || || |||||
Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||| | || ||||| ||||| ||||||||||| | || || ||| || |||
Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAAC 506983
Query 31373 ATTCAAAAAGAATCGACTCTTCAT 31396
|| || || || || || || |||
Sbjct 506984 ATCCAGAAGGAGTCTACCCTCCAT 507007
Score = 102 bits (112), Expect = 7e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| || ||||| || |||| || ||||| |||||| | || ||||| || ||
Sbjct 506347 CATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTC 506406
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| || ||| | ||| ||||| ||||| | || || |||||
Sbjct 506407 TGATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCA 506466
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| | || ||||||||||| ||| | |||||| || || ||||| ||
Sbjct 506467 ACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAA 506526
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402
|||||||||||||| || | ||| |||||
Sbjct 506527 TATTCAAAAAGAATCTACATTGCATTTGGTA 506557
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||| |||| || || || || || | || || ||||| ||
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| ||||| | ||| || || |||||| | || || || |||
Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || || || ||||||||||||||||| | || || || || |||
Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|| || || ||||| || || ||| |||| |||
Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTGCTT 509450
>seq1094
Length=241507
Score = 102 bits (112), Expect = 7e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| || || || ||||| || || || ||||| || ||| | || || || ||
Sbjct 166285 AAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCC 166226
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||||| | | |||| ||||| | ||| ||||| ||||| | || || ||
Sbjct 166225 TTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGA 166166
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
|| || ||| | || || ||||||||||| ||||| || | || || || ||
Sbjct 166165 TCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTA 166106
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||||||||| || |||||| | ||| |||||||
Sbjct 166105 CAACATTCAAAAGGAGTCGACTTTGCATTTGGTACT 166070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445699301012640
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