Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq305 100 6e-16
seq326 95.1 2e-14
>seq305
Length=710094
Score = 100 bits (110), Expect = 6e-16
Identities = 213/313 (68%), Gaps = 5/313 (2%)
Strand=Plus/Minus
Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980
|| |||||||| |||||||| || ||||| || || || || |||||||||||| |
Sbjct 408690 GCTTTTGCTGCTGTTGAAGGCATATTCTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTG 408631
Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040
||||| | || | |||| || | || | |||||| ||| | || || | ||||||
Sbjct 408630 AAGAAACGTGGCCTAATGCCCGGCTTAACATTCTCCAACGAGCTGATATCGCGTGACGAA 408571
Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA-TACCCCATC 102099
||| | ||| | || ||||| || || || || ||| | | || | | |||| |
Sbjct 408570 GGTTTGCATTGTGATTTTGC-TGTAT--TGATGTTTAAGTATCTGGTGCAGAAGCCCAGC 408514
Query 102100 AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159
|||||| | || |||| || | | ||||| || ||| ||||| ||||| || ||
Sbjct 408513 -AGAGAACGTATCATTGAGATAATAAGAGAAGCGGTTAAAATCGAACAGGAATTCCTTAC 408455
Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219
|| | |||| || || | || ||||| || | || ||| | |||| |||||
Sbjct 408454 AGAAGCATTGCCATGCAATTTGATTGGTATGAATTGTGATTTAATGTCCGAGTATATTGA 408395
Query 102220 ATTTGTGGCAGAT 102232
|||||| ||||||
Sbjct 408394 ATTTGTAGCAGAT 408382
>seq326
Length=702362
Score = 95.1 bits (104), Expect = 2e-14
Identities = 487/762 (64%), Gaps = 40/762 (5%)
Strand=Plus/Plus
Query 35142 TGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGT 35201
|||| | ||| ||| | |||||| || || || || |||||| | |||||| | |
Sbjct 509517 TGAAAAGGGA-GATCGCACTGGAGTGGGTACCCTCTCATCATTTGGAGCTCAAATGCGTT 509575
Query 35202 TCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAG 35261
|| | | ||||| | || |||| | ||||| || ||| | |||||||| | |
Sbjct 509576 TCGATATGCGAGA--ATCCT-TTCCTTTGCTCACCACTAAGCGGGTCTTCTGGAGGGCTG 509632
Query 35262 TTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCA-AG 35320
||| ||||| || |||||||| ||| || | || ||||| | || |
Sbjct 509633 TTGCAGAAGAGCTTATTTGGTTCATACATGGCTGCACCAATGC-AAAGATTCTGCAGGAC 509691
Query 35321 AAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAG-GGTT 35379
||||| || ||||| ||| | | || | | || || |||||||| | || ||||
Sbjct 509692 AAGAATATTCACATATGGGATGGCAACAGCACACGCGACTTTTTGGATA--AGCTCGGTT 509749
Query 35380 ATACG-ATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTG 35438
||| || ||| || || |||||||| || ||||| || || || |||||||||||||
Sbjct 509750 TCACGGATCGAGAGGAAGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTG 509809
Query 35439 GTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAA---GGGTATTGATCAATT-- 35493
| ||| | || || || |||| | || || |||| | || ||| |
Sbjct 509810 GAGCTAAGTACCGAACTTGCCA---CGATAACTATGACAACGAGGGTGTGGACCAACTAA 509866
Query 35494 ----GGCCAAT-ATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATG 35548
|| | | |||| | | | || ||||| ||||| ||| | || || |||
Sbjct 509867 AACAGGTTATTCATACAATACGCACT-------AATCCCGATGACAGACGTATCATGATG 509919
Query 35549 ACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTG-C 35607
| || |||||||| ||||| | | | |||||| | ||||| || || || || |
Sbjct 509920 TCCGCTTGGAATCCCATGGACATGCCGCAGATGGCTTTGCCTCCCTGTCAT-TGCTTGGC 509978
Query 35608 TCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGT 35667
|| |||||||| || ||||| || | || || || || ||||| || || | || |
Sbjct 509979 CCAGTTTTATGTTGCCAATGGTGAGCTATCTTGTCAATTATATCAACGCAGTGCCGACAT 510038
Query 35668 CGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAG 35727
|| || || || || ||||| ||||| ||||| | | |||| || |||| |||
Sbjct 510039 GGGCTTAGGAGTACCATTCAACATTGCCTCATATGCCTTGTTGACCTATATGATTGCCCA 510098
Query 35728 TATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAA 35787
|| || ||||| || || || ||| | | ||| | || || || || | |||||
Sbjct 510099 CATAACTGGCCTAAAGCCTGGTGATTTTGTACACACATTGGGCGATGCCCATGTATATAA 510158
Query 35788 TACCCACATTGAGGTGTTAAAGAAGCAGTTGTGCCGCGTCCCTAGACCATTCCCTAAGTT 35847
| |||| |||| || | | |||| || ||| || ||||| || || || ||
Sbjct 510159 GAACCACGTTGAACCATTGAGGGAGCAATTAAAACGCAAACCCAGACCTTTTCCCAAATT 510218
Query 35848 GAGGATTT----TAATGGCTCCAGAAAAAATTGAGGACTTTA 35885
|| || ||| | |||| | |||||||||||||
Sbjct 510219 GATAATCAAACGTAAAGT----AGAAGATATTGAGGACTTTA 510256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989431318940110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |