Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq305 100 6e-16 seq326 95.1 2e-14 >seq305 Length=710094 Score = 100 bits (110), Expect = 6e-16 Identities = 213/313 (68%), Gaps = 5/313 (2%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || |||||||| |||||||| || ||||| || || || || |||||||||||| | Sbjct 408690 GCTTTTGCTGCTGTTGAAGGCATATTCTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTG 408631 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || | |||| || | || | |||||| ||| | || || | |||||| Sbjct 408630 AAGAAACGTGGCCTAATGCCCGGCTTAACATTCTCCAACGAGCTGATATCGCGTGACGAA 408571 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA-TACCCCATC 102099 ||| | ||| | || ||||| || || || || ||| | | || | | |||| | Sbjct 408570 GGTTTGCATTGTGATTTTGC-TGTAT--TGATGTTTAAGTATCTGGTGCAGAAGCCCAGC 408514 Query 102100 AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159 |||||| | || |||| || | | ||||| || ||| ||||| ||||| || || Sbjct 408513 -AGAGAACGTATCATTGAGATAATAAGAGAAGCGGTTAAAATCGAACAGGAATTCCTTAC 408455 Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219 || | |||| || || | || ||||| || | || ||| | |||| ||||| Sbjct 408454 AGAAGCATTGCCATGCAATTTGATTGGTATGAATTGTGATTTAATGTCCGAGTATATTGA 408395 Query 102220 ATTTGTGGCAGAT 102232 |||||| |||||| Sbjct 408394 ATTTGTAGCAGAT 408382 >seq326 Length=702362 Score = 95.1 bits (104), Expect = 2e-14 Identities = 487/762 (64%), Gaps = 40/762 (5%) Strand=Plus/Plus Query 35142 TGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGT 35201 |||| | ||| ||| | |||||| || || || || |||||| | |||||| | | Sbjct 509517 TGAAAAGGGA-GATCGCACTGGAGTGGGTACCCTCTCATCATTTGGAGCTCAAATGCGTT 509575 Query 35202 TCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAG 35261 || | | ||||| | || |||| | ||||| || ||| | |||||||| | | Sbjct 509576 TCGATATGCGAGA--ATCCT-TTCCTTTGCTCACCACTAAGCGGGTCTTCTGGAGGGCTG 509632 Query 35262 TTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCA-AG 35320 ||| ||||| || |||||||| ||| || | || ||||| | || | Sbjct 509633 TTGCAGAAGAGCTTATTTGGTTCATACATGGCTGCACCAATGC-AAAGATTCTGCAGGAC 509691 Query 35321 AAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAG-GGTT 35379 ||||| || ||||| ||| | | || | | || || |||||||| | || |||| Sbjct 509692 AAGAATATTCACATATGGGATGGCAACAGCACACGCGACTTTTTGGATA--AGCTCGGTT 509749 Query 35380 ATACG-ATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTG 35438 ||| || ||| || || |||||||| || ||||| || || || ||||||||||||| Sbjct 509750 TCACGGATCGAGAGGAAGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTG 509809 Query 35439 GTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAA---GGGTATTGATCAATT-- 35493 | ||| | || || || |||| | || || |||| | || ||| | Sbjct 509810 GAGCTAAGTACCGAACTTGCCA---CGATAACTATGACAACGAGGGTGTGGACCAACTAA 509866 Query 35494 ----GGCCAAT-ATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATG 35548 || | | |||| | | | || ||||| ||||| ||| | || || ||| Sbjct 509867 AACAGGTTATTCATACAATACGCACT-------AATCCCGATGACAGACGTATCATGATG 509919 Query 35549 ACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTG-C 35607 | || |||||||| ||||| | | | |||||| | ||||| || || || || | Sbjct 509920 TCCGCTTGGAATCCCATGGACATGCCGCAGATGGCTTTGCCTCCCTGTCAT-TGCTTGGC 509978 Query 35608 TCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGT 35667 || |||||||| || ||||| || | || || || || ||||| || || | || | Sbjct 509979 CCAGTTTTATGTTGCCAATGGTGAGCTATCTTGTCAATTATATCAACGCAGTGCCGACAT 510038 Query 35668 CGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAG 35727 || || || || || ||||| ||||| ||||| | | |||| || |||| ||| Sbjct 510039 GGGCTTAGGAGTACCATTCAACATTGCCTCATATGCCTTGTTGACCTATATGATTGCCCA 510098 Query 35728 TATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAA 35787 || || ||||| || || || ||| | | ||| | || || || || | ||||| Sbjct 510099 CATAACTGGCCTAAAGCCTGGTGATTTTGTACACACATTGGGCGATGCCCATGTATATAA 510158 Query 35788 TACCCACATTGAGGTGTTAAAGAAGCAGTTGTGCCGCGTCCCTAGACCATTCCCTAAGTT 35847 | |||| |||| || | | |||| || ||| || ||||| || || || || Sbjct 510159 GAACCACGTTGAACCATTGAGGGAGCAATTAAAACGCAAACCCAGACCTTTTCCCAAATT 510218 Query 35848 GAGGATTT----TAATGGCTCCAGAAAAAATTGAGGACTTTA 35885 || || ||| | |||| | ||||||||||||| Sbjct 510219 GATAATCAAACGTAAAGT----AGAAGATATTGAGGACTTTA 510256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989431318940110