Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1090 419 3e-112 seq305 264 1e-65 >seq1090 Length=275775 Score = 419 bits (464), Expect = 3e-112 Identities = 1244/1888 (66%), Gaps = 58/1888 (3%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| || | | || || ||||| || | | ||| ||||| ||||| || || Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||| || ||||| || || | |||| || | || || || | | Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| ||| Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 62284 | ||||| | ||||||||| | ||||| || | ||| | || | |||| |||| Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT-TCTTTGGGAAT 261338 Query 62285 GT--TTG-TATTCTGAATGGATCCACCATCTACCA-TAATCCTATTCTTGATCTCATCAT 62340 | | | | || || ||||| |||| ||| | |||| |||| || || || |||| Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGG-CTAGAAATAATTTTATTTTTCATTTCCTCAT 261279 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 ||||| | ||||| ||| || |||| | ||| | || || | | |||||| | Sbjct 261278 CCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCAC 261219 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 | || | ||| | || || ||||| || || |||||||| | | ||||| || | Sbjct 261218 CCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGC 261159 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 ||| |||||| ||||| || || || ||||| || |||| | | ||| | | || Sbjct 261158 CCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACAC 261099 Query 62521 CGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAAC 62578 | ||||| | ||| | || ||||| |||||| ||| ||||| | || || Sbjct 261098 C--ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTT 261041 Query 62579 ANNNNNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTAT 62634 |||||| || ||||| || ||||| | |||| ||| || | Sbjct 261040 GTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT----TCCTGGATACGTTT 260985 Query 62635 CATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGG 62694 |||| || || || | ||||| | || |||||| || || || ||||| || ||||| | Sbjct 260984 CATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAG 260925 Query 62695 TTTCAAAGATCTTCTTATTTAGATCTTGT--GCTTCCGGGCTATCAAATGGATAATTTAA 62752 ||||||| || | | ||| | || ||| || ||| ||| || | |||||| | Sbjct 260924 TTTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCAT 260867 Query 62753 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 |||||| | | || || || || || |||||||| || || || | |||||| ||| Sbjct 260866 GAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATT 260807 Query 62813 AGAGATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 ||| |||| | || ||| | | ||||| || || | |||||| ||||| |||||||| Sbjct 260806 AGAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTG 260749 Query 62871 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATC 62923 | | | ||||| || ||||| ||| ||| ||||| ||| | || Sbjct 260748 CGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC 260689 Query 62924 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC 62983 ||||||||||||| || || |||| || || || || | |||| | | Sbjct 260688 ----ACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGC 260633 Query 62984 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043 | ||||| | || || ||||| | ||| || || || || || || | ||||||||| Sbjct 260632 TGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTG 260573 Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103 |||||| || ||||| | |||||| | || ||| | ||||| |||||||| | || Sbjct 260572 ATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTG 260513 Query 63104 AGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGT-ATCT---C 63158 ||||||||||| || ||| | || || | ||||| || | | ||| | || | Sbjct 260512 GGATTCTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT---TCTGTTAGCTTTGC 260457 Query 63159 CTTTCTCTTTCGTATAGAGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAA 63217 | || |||||||| || || | | || || || || ||||| || | | | Sbjct 260456 CGGCCT-TTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAG 260399 Query 63218 TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63277 || ||||||| | |||||||| | ||||| || |||| || | ||| ||| ||| Sbjct 260398 TCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCAT 260339 Query 63278 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 ||| | ||| || ||||||||||| ||| || |||||||| | | ||| || || || | Sbjct 260338 AAACAAATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGC 260280 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | ||||||||||| | ||| | ||| | | || || |||||||| ||||||||||| | Sbjct 260279 CGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGA 260220 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 |||| | | ||||| |||||| || |||||||| | ||| | || ||||| Sbjct 260219 TGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGA 260160 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | ||||| ||||| || | | ||| || || | ||||| || |||| || | || Sbjct 260159 ATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTC 260100 Query 63517 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 | | || ||||| | | |||||| || || || || || ||| || || | Sbjct 260099 CCTTAGCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCAT 260042 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 || || | | | | | | | ||||| || || ||| | | |||| | | || Sbjct 260041 AGCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAG 259982 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 ||||| ||||| ||| ||||| | || | ||| ||| || || || || || || Sbjct 259981 GAAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATG 259922 Query 63695 CGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 ||||| | || || || || || || || ||||| || || ||||| ||| | Sbjct 259921 GGTAAAGTAACGCTCGGACAACCAG-TTATAAGTTTCAATGGCCGAATCTATGTCCTCTC 259863 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 |||||| ||||| || |||||||| | ||| || || || | ||| |||| || | Sbjct 259862 CATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCAT 259803 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 | |||||||| | || || ||| | ||| ||||| ||||| |||||||| ||| | Sbjct 259802 TCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAAT 259743 Query 63874 CTCGTTCGTAAATAATAACCGAATTGAG 63901 | || ||||| | ||| |||| ||||| Sbjct 259742 CACGGTCGTATACAATGGCCGAGTTGAG 259715 >seq305 Length=710094 Score = 264 bits (292), Expect = 1e-65 Identities = 485/704 (69%), Gaps = 9/704 (1%) Strand=Plus/Plus Query 33416 ATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 33475 |||||| || ||||| ||||| ||| | ||||||||||| || || | || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 33476 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA--AAT 33533 ||| | || | ||||| ||||| ||||| || ||||| | | |||| || ||| Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 33534 CTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAA-ACATGCGAAATC 33592 ||| | ||| | | || || | | || ||||||||||| ||| || ||||| Sbjct 408502 GATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATC 408558 Query 33593 GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAG 33652 || |||| ||| ||||| | || | ||||| || || || | ||||||||||| Sbjct 408559 ACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAG 408618 Query 33653 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTAC 33712 |||||| || || | ||| || ||||| || || ||| ||||| || ||||| || Sbjct 408619 GCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAAC 408678 Query 33713 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC--ATG-TATCCACTTTTG 33769 |||||||| || || | | || ||| || || || ||| |||||| Sbjct 408679 AGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAA 408738 Query 33770 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33829 ||||||||| || || |||| ||| ||||| ||||| |||||||| || | ||| | Sbjct 408739 AGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATATTC 408798 Query 33830 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33889 || | || |||||||| ||| || || || | || || ||||||||||| |||| Sbjct 408799 ACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAAC 408858 Query 33890 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 33949 || || || || ||||| || || ||||| || | || || || | ||||| ||| Sbjct 408859 ATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTG 408918 Query 33950 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 | |||||| || | | ||| ||||| ||||| ||||| ||| ||||| || ||||| Sbjct 408919 AGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAA 408978 Query 34010 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 34069 ||||| || |||||| |||| | ||| ||||| | ||| ||| |||||||| Sbjct 408979 CACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTT 409038 Query 34070 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||| | ||||||||| || || ||||||||||||||||| |||| Sbjct 409039 AGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629722796705760