Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 284 1e-71
seq305 228 8e-55
>seq1090
Length=275775
Score = 284 bits (314), Expect = 1e-71
Identities = 1182/1846 (64%), Gaps = 28/1846 (2%)
Strand=Plus/Minus
Query 36781 TTACTACACTCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATAC 36840
|| |||| ||||| ||||||| ||||| ||| | || | ||| ||||||| |||||||
Sbjct 261591 TTGCTACGATCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATAC 261532
Query 36841 ATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT 36900
|| || || || || || | |||| || ||||| || |||| ||| ||||
Sbjct 261531 ATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAG 261472
Query 36901 GTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCG 36960
| || | | | || ||| | | ||||||||||| || || || || || | ||
Sbjct 261471 TTGGGCTCGGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCA 261412
Query 36961 GCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTT 37020
|| ||||||| | | || ||| || ||||| |||||||| || | | | |
Sbjct 261411 GCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGT 261352
Query 37021 ATATTATCTGGTAAAT--CTAAATGTT--GAATAGAACCATTATGTAACACAATTGTATT 37076
|| || | ||| || | || ||||| | || || ||| | | |||| ||||
Sbjct 261351 AT-TTCTTTGGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATT 261293
Query 37077 CTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTT 37134
|| || || | || ||| || || | || | | ||| | | | || ||||
Sbjct 261292 TTTCATTTCCTCATCCCA--TAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTG 261235
Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194
|||| | || || || |||| ||| | | |||||| || || ||| || |||||
Sbjct 261234 ACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCG 261175
Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254
| | ||||| || | | ||||| | || || || || ||||| || || | ||
Sbjct 261174 AAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGC 261115
Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314
|| ||| | | |||||| | |||||| | ||||| || ||||||||| | |
Sbjct 261114 AGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGA 261055
Query 37315 TCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCG 37374
|| || || ||| |||||| |||||||| || |||||||| ||| |||| | ||
Sbjct 261054 TCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGG-GCTTCC 260996
Query 37375 TT-ATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433
| ||| || ||||| || || | || ||| | ||| ||||| | ||| | || |
Sbjct 260995 TGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACC 260936
Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493
||| || || ||||| || |||||| ||| ||| | || || ||||| ||| | |
Sbjct 260935 ATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGG 260876
Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553
||| | || | || | ||| || |||||||| ||||| || || ||||| | |||
Sbjct 260875 ATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATG 260816
Query 37554 TTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATT 37613
| | ||||||| | | || || |||||| || |||| |||||| ||||| ||
Sbjct 260815 TCTGAGATTAGATTTTCTGGCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTT 260756
Query 37614 TAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT 37673
||||| | | | ||| | | | | |||| || | || ||| | || ||
Sbjct 260755 GAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAA-AGTTTTTT 260697
Query 37674 AT----TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT 37729
| ||||| | ||| |||| || | | || || ||||| | ||||||
Sbjct 260696 CGGGCGTCACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATC-- 260639
Query 37730 CGTTACTAAATTGTATA--ATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATT 37787
|| | || ||| | | || ||||| || | ||| || || |||| || || | |||
Sbjct 260638 CGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATT 260579
Query 37788 GCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTC 37847
|||||| ||| ||||||||| || ||| |||| || || || ||||| |||
Sbjct 260578 TTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTC 260519
Query 37848 TATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGCTTTAAttt 37906
|| ||| | || ||||| | ||| || | || || |||| | | ||| ||
Sbjct 260518 TACTTGGGATTCTATAATGGCAAACCA-AAGCGCCTGCGCCTTAATGGTTCTGTTAGCTT 260460
Query 37907 ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATA 37966
| ||||||||| | || | |||| ||| || | ||||| || || |
Sbjct 260459 TGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGA 260400
Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026
||||||||||| | ||||||||||| ||||| || | | || ||| || ||| ||
Sbjct 260399 GTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCA 260340
Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086
|||| ||||| |||| ||| | ||| || | |||| ||| | || ||||| || |
Sbjct 260339 TAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGC 260280
Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146
| ||||||| |||| | ||| || || || || | ||||| ||||| | || |
Sbjct 260279 CGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGA 260220
Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206
| | | ||| || || | ||| |||| ||||||| || || | | |||||
Sbjct 260219 TGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGA 260160
Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTAC 38266
||| ||||||||| || || | |||||| || | || || | |||| ||| |||| |
Sbjct 260159 ATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTC 260100
Query 38267 CCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324
||||||| || || | | || | | ||| || || || || ||| || || |
Sbjct 260099 CCTTAGCGCGAATGCAATGGACATTG--ATTCCAATACCTCCAGCTGATTTGGAAATCAT 260042
Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384
||| || || | | | | ||| || || || ||| || | || | | |
Sbjct 260041 AGCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAG 259982
Query 38385 AAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443
|||||| ||||| ||| || | || || | || ||| ||||| || |||||||
Sbjct 259981 GAAACAAGAAGACAATTGTGGACGAT-TTGTGGCTGCAGCAAACAATGTGGGCGATGCAT 259923
Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503
| | || | || ||||| | ||||| ||||| || | |||||| || | |
Sbjct 259922 GGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTC 259863
Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTAT 38563
| |||||||||| | || | ||| ||||||||||| || | ||| || ||| ||
Sbjct 259862 CATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCAT 259803
Query 38564 TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609
|| ||| | |||||| || ||||| || || | |||||| ||
Sbjct 259802 TCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTA 259757
>seq305
Length=710094
Score = 228 bits (252), Expect = 8e-55
Identities = 471/691 (68%), Gaps = 11/691 (2%)
Strand=Plus/Plus
Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC-CA 11522
|||||| || ||||| ||||||| ||||||||| |||||||||||| || | || ||
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 11523 CCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACG 11582
| ||| || |||| | || |||| ||| || |||||||| || | ||||||
Sbjct 408442 TGGCAAT-GCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAA 408500
Query 11583 TTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA-ACACGCAAAATCA 11641
| ||| ||| | || || | | || |||||||| || ||| |||||||||
Sbjct 408501 TGATACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATCA 408559
Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701
||||| ||||||||||| | ||| || || || || |||||||| |||||||| |
Sbjct 408560 CAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGG 408619
Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761
|| ||||| || | ||| || || | ||||| || |||||||| || || |||
Sbjct 408620 CCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAACA 408679
Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA-GATATCCATTTTCTG 11818
|| ||||| |||| ||| | ||| ||| | || | | | | |||||||||
Sbjct 408680 GCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAAA 408739
Query 11819 GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT 11878
|||||||||||||| |||| || | ||| ||||| || || || ||||||| |||
Sbjct 408740 GCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAAT--ATT 408797
Query 11879 --TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936
|| | |||| | | ||| || || || | | || |||||||| || ||||
Sbjct 408798 CACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAA 408857
Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996
||| |||||||| || || || |||||||| || || || || | || || ||
Sbjct 408858 CATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTT 408917
Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056
| ||||||| || | | ||||||||| || || ||||| | ||||| || || |
Sbjct 408918 GAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCA 408977
Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTT 12116
| ||| || || ||| |||| | | || | ||| ||||| ||| | |||||
Sbjct 408978 ACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTT 409037
Query 12117 TTGATAAATCTACTTCTTCAACGGTCCAAAA 12147
| || | ||| ||||| ||||| ||||||||
Sbjct 409038 TAGACAGATCCACTTCCTCAACAGTCCAAAA 409068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468454275304480
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