Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1090 284 1e-71 seq305 228 8e-55 >seq1090 Length=275775 Score = 284 bits (314), Expect = 1e-71 Identities = 1182/1846 (64%), Gaps = 28/1846 (2%) Strand=Plus/Minus Query 36781 TTACTACACTCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATAC 36840 || |||| ||||| ||||||| ||||| ||| | || | ||| ||||||| ||||||| Sbjct 261591 TTGCTACGATCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATAC 261532 Query 36841 ATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT 36900 || || || || || || | |||| || ||||| || |||| ||| |||| Sbjct 261531 ATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAG 261472 Query 36901 GTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCG 36960 | || | | | || ||| | | ||||||||||| || || || || || | || Sbjct 261471 TTGGGCTCGGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCA 261412 Query 36961 GCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTT 37020 || ||||||| | | || ||| || ||||| |||||||| || | | | | Sbjct 261411 GCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGT 261352 Query 37021 ATATTATCTGGTAAAT--CTAAATGTT--GAATAGAACCATTATGTAACACAATTGTATT 37076 || || | ||| || | || ||||| | || || ||| | | |||| |||| Sbjct 261351 AT-TTCTTTGGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATT 261293 Query 37077 CTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTT 37134 || || || | || ||| || || | || | | ||| | | | || |||| Sbjct 261292 TTTCATTTCCTCATCCCA--TAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTG 261235 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 |||| | || || || |||| ||| | | |||||| || || ||| || ||||| Sbjct 261234 ACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCG 261175 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 | | ||||| || | | ||||| | || || || || ||||| || || | || Sbjct 261174 AAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGC 261115 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 || ||| | | |||||| | |||||| | ||||| || ||||||||| | | Sbjct 261114 AGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGA 261055 Query 37315 TCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCG 37374 || || || ||| |||||| |||||||| || |||||||| ||| |||| | || Sbjct 261054 TCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGG-GCTTCC 260996 Query 37375 TT-ATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGC 37433 | ||| || ||||| || || | || ||| | ||| ||||| | ||| | || | Sbjct 260995 TGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACC 260936 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 ||| || || ||||| || |||||| ||| ||| | || || ||||| ||| | | Sbjct 260935 ATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGG 260876 Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 ||| | || | || | ||| || |||||||| ||||| || || ||||| | ||| Sbjct 260875 ATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATG 260816 Query 37554 TTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATT 37613 | | ||||||| | | || || |||||| || |||| |||||| ||||| || Sbjct 260815 TCTGAGATTAGATTTTCTGGCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTT 260756 Query 37614 TAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT 37673 ||||| | | | ||| | | | | |||| || | || ||| | || || Sbjct 260755 GAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAA-AGTTTTTT 260697 Query 37674 AT----TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT 37729 | ||||| | ||| |||| || | | || || ||||| | |||||| Sbjct 260696 CGGGCGTCACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATC-- 260639 Query 37730 CGTTACTAAATTGTATA--ATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATT 37787 || | || ||| | | || ||||| || | ||| || || |||| || || | ||| Sbjct 260638 CGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATT 260579 Query 37788 GCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTC 37847 |||||| ||| ||||||||| || ||| |||| || || || ||||| ||| Sbjct 260578 TTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTC 260519 Query 37848 TATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGCTTTAAttt 37906 || ||| | || ||||| | ||| || | || || |||| | | ||| || Sbjct 260518 TACTTGGGATTCTATAATGGCAAACCA-AAGCGCCTGCGCCTTAATGGTTCTGTTAGCTT 260460 Query 37907 ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATA 37966 | ||||||||| | || | |||| ||| || | ||||| || || | Sbjct 260459 TGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGA 260400 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 ||||||||||| | ||||||||||| ||||| || | | || ||| || ||| || Sbjct 260399 GTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCA 260340 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 |||| ||||| |||| ||| | ||| || | |||| ||| | || ||||| || | Sbjct 260339 TAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGC 260280 Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 | ||||||| |||| | ||| || || || || | ||||| ||||| | || | Sbjct 260279 CGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGA 260220 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | | ||| || || | ||| |||| ||||||| || || | | ||||| Sbjct 260219 TGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGA 260160 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTAC 38266 ||| ||||||||| || || | |||||| || | || || | |||| ||| |||| | Sbjct 260159 ATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTC 260100 Query 38267 CCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 ||||||| || || | | || | | ||| || || || || ||| || || | Sbjct 260099 CCTTAGCGCGAATGCAATGGACATTG--ATTCCAATACCTCCAGCTGATTTGGAAATCAT 260042 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 ||| || || | | | | ||| || || || ||| || | || | | | Sbjct 260041 AGCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAG 259982 Query 38385 AAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 |||||| ||||| ||| || | || || | || ||| ||||| || ||||||| Sbjct 259981 GAAACAAGAAGACAATTGTGGACGAT-TTGTGGCTGCAGCAAACAATGTGGGCGATGCAT 259923 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 | | || | || ||||| | ||||| ||||| || | |||||| || | | Sbjct 259922 GGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTC 259863 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTAT 38563 | |||||||||| | || | ||| ||||||||||| || | ||| || ||| || Sbjct 259862 CATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCAT 259803 Query 38564 TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 || ||| | |||||| || ||||| || || | |||||| || Sbjct 259802 TCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTA 259757 >seq305 Length=710094 Score = 228 bits (252), Expect = 8e-55 Identities = 471/691 (68%), Gaps = 11/691 (2%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC-CA 11522 |||||| || ||||| ||||||| ||||||||| |||||||||||| || | || || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 11523 CCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACG 11582 | ||| || |||| | || |||| ||| || |||||||| || | |||||| Sbjct 408442 TGGCAAT-GCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAA 408500 Query 11583 TTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA-ACACGCAAAATCA 11641 | ||| ||| | || || | | || |||||||| || ||| ||||||||| Sbjct 408501 TGATACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATCA 408559 Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 ||||| ||||||||||| | ||| || || || || |||||||| |||||||| | Sbjct 408560 CAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGG 408619 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || ||||| || | ||| || || | ||||| || |||||||| || || ||| Sbjct 408620 CCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAACA 408679 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA-GATATCCATTTTCTG 11818 || ||||| |||| ||| | ||| ||| | || | | | | ||||||||| Sbjct 408680 GCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAAA 408739 Query 11819 GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT 11878 |||||||||||||| |||| || | ||| ||||| || || || ||||||| ||| Sbjct 408740 GCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAAT--ATT 408797 Query 11879 --TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936 || | |||| | | ||| || || || | | || |||||||| || |||| Sbjct 408798 CACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAA 408857 Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996 ||| |||||||| || || || |||||||| || || || || | || || || Sbjct 408858 CATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTT 408917 Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 | ||||||| || | | ||||||||| || || ||||| | ||||| || || | Sbjct 408918 GAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCA 408977 Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTT 12116 | ||| || || ||| |||| | | || | ||| ||||| ||| | ||||| Sbjct 408978 ACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTT 409037 Query 12117 TTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 | || | ||| ||||| ||||| |||||||| Sbjct 409038 TAGACAGATCCACTTCCTCAACAGTCCAAAA 409068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468454275304480