Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 461 1e-124
seq305 257 2e-63
>seq1090
Length=275775
Score = 461 bits (510), Expect = 1e-124
Identities = 1501/2295 (65%), Gaps = 86/2295 (4%)
Strand=Plus/Minus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
|||||||| || | | || || ||||| || | | ||| ||||| ||||| || ||
Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| |||| || ||||| || || | |||| || | || || || | |
Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
|| ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| |||
Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 65077
| ||||| | ||||||||| | ||||| || | ||| | || | |||| ||||
Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT-TCTTTGGGAAT 261338
Query 65078 GT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134
| | | | || || ||||| |||| | ||||| |||| || || || ||||
Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATC 261278
Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194
||||| | ||||| ||| || |||| | ||| |||| || | | ||||| ||
Sbjct 261277 CCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACC 261218
Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254
|| | ||| | || || ||||| || || |||||||| | || ||||| || ||
Sbjct 261217 CGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCC 261158
Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314
|| |||||| ||||| || || || ||||| || |||| | | ||| | | |||
Sbjct 261157 CATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACC 261098
Query 65315 GTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 65372
||||| | ||| | || ||||| | |||||| ||| ||||| | || ||
Sbjct 261097 --ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTG 261040
Query 65373 NNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATC 65428
||| || ||||| || ||||| | |||| ||| || ||
Sbjct 261039 TTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT----TCCTGGATACGTTTC 260984
Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 65488
|| || || || | ||||| | ||||||||| || || || ||||| || ||||| ||
Sbjct 260983 ATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGT 260924
Query 65489 TTCGAAGATCTTCTTATTTAGATCTTGT--GCTTCCAGGCTATCAAATGGATAATTTAAG 65546
||| || || | | ||| | || ||| || ||| ||| || | |||||| | |
Sbjct 260923 TTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATG 260866
Query 65547 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 65606
||||| | | || || || || || |||||||| || || || | |||||| ||||
Sbjct 260865 AGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTA 260806
Query 65607 GAGATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 65664
|| |||| | || ||| | | ||||| || || | |||||| ||||| |||||||| |
Sbjct 260805 GAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTGC 260748
Query 65665 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCTCATCT 65717
| | ||||| || ||||| ||| ||| ||||| ||| | ||
Sbjct 260747 GCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC- 260689
Query 65718 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777
||||||||||||| || || |||| || || || || | |||| | |
Sbjct 260688 ---ACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCT 260632
Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837
| ||||| | || || ||||| | ||| || || || ||||| || | ||||||||||
Sbjct 260631 GAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGA 260572
Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897
||||| || ||||| | |||||| | || ||| | ||||| |||||||| | ||
Sbjct 260571 TTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGG 260512
Query 65898 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC 65956
||||||||||| || ||| | || || | ||||| || | | ||| | |||| |
Sbjct 260511 GATTCTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT---TCTGT-TAGCTTTGC 260457
Query 65957 TC----TTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAAT 66011
|||||||| | || || | | || || || || ||||| || | | | |
Sbjct 260456 CGGCCTTTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGT 260398
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
|| ||||||| | |||||||| | ||||| || |||| || | ||| ||| ||||
Sbjct 260397 CCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATA 260338
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAA-ATCTCTGGTTCTATGTTCCTCGTTTCC 66130
|| | ||| || ||||||||||| ||| | || |||||||| | ||| || || || ||
Sbjct 260337 AACAAATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCC 260279
Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190
||||||||||| | ||| | ||| | | || || ||||||| ||||||||||| ||
Sbjct 260278 GGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGAT 260219
Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250
||| | | ||||| |||||| || |||||||| | ||| | || ||||| |
Sbjct 260218 GGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAA 260159
Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310
||||| ||||| || | | ||||||||| || ||||| || |||| || | ||||
Sbjct 260158 TACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCC 260099
Query 66311 ACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368
| || ||||| | | |||||| || || || || || ||| || || |
Sbjct 260098 CTTAGCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCATA 260041
Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428
|| || | | | | | | | |||||||| ||| ||| | | |||| | | ||
Sbjct 260040 GCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGG 259981
Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488
||||| ||||| ||| ||||| | || | ||| ||| || || || || || ||
Sbjct 259980 AAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGG 259921
Query 66489 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547
||||| | || || || || || || || ||||| || || ||||| ||| |
Sbjct 259920 GTAAAGTAACGCTCGGACAACCAG-TTATAAGTTTCAATGGCCGAATCTATGTCCTCTCC 259862
Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607
|||||| ||||| || |||||||| | ||| || || || | ||| | ||||| ||
Sbjct 259861 ATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATT 259802
Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667
|||||||| | || || ||| | ||| ||||| ||||| |||||||| ||| ||
Sbjct 259801 CATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATC 259742
Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 66727
|| ||||| | ||| |||||||||| ||| || ||| | || ||| |
Sbjct 259741 ACGGTCGTATACAATGGCCGAGTTGAGGCGCTCCGAATTTTTCATGACCACA-------T 259689
Query 66728 AATACTTGAAATAATCGGA---GAATGTTTCCCATT-TTTAGGATTGACATAGTTGAATA 66783
||| |||| ||||||| | || | ||| || | || | | || ||| |
Sbjct 259688 TATA-ATGAA--AATCGGAAATCATTGATGCCCTTTGTCCAGTCTCGTCA---CTGACGA 259635
Query 66784 AATCCTCCA--TCACT--TCACT-----AAATAGtttttttGTTTCTTTGTGTAGATTTG 66834
||| | || ||||| | ||| || | ||||| ||||||||||| | || |
Sbjct 259634 AATGATGCAGGTCACTGATGACTTCCGAGAAAACCTTTTTAGTTTCTTTGTGCAAGTTGG 259575
Query 66835 ATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTG 66894
| || || || | ||| || | | |||||||| | ||| | ||| || ||||| |
Sbjct 259574 ACACAGCAATGCGAGCCGCCAACAAAGCATAATCGGCATGATTTGTTGTGAGTGTGGCAG 259515
Query 66895 CTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGA 66954
|| |||| || |||| | ||||||||| | ||||| || || ||| | || | ||
Sbjct 259514 CTGTTTCTGCGGCCAAATTGTCCAATTGTTGAGTTGTGACGCCGCAATACAAACCATTGA 259455
Query 66955 TAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATT 67014
| ||| | | | ||| | ||||| | || |||| | |||||| || || |
Sbjct 259454 TTACCCTTAAGGTTATGGCCACTGGATCGACGAAGTCCATGTTGAGGCCATAGCA-AAGT 259396
Query 67015 TTCT-AATACGAGATGTGATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTT 67072
|||| || || || || || ||||| || ||| || | || ||| |||| |||||
Sbjct 259395 TTCTGGATGCGTGAAGTAATCTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCACGTTT 259337
Query 67073 AATGACAAACATTTT 67087
| ||||| | |||
Sbjct 259336 GACCACAAAAAGTTT 259322
>seq305
Length=710094
Score = 257 bits (284), Expect = 2e-63
Identities = 481/702 (69%), Gaps = 5/702 (1%)
Strand=Plus/Plus
Query 35992 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 36051
|||||| |||||||| ||||| ||| | ||||||||||| || || | ||
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 36052 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATAT 36111
||| | || | ||||| ||||| ||||| || ||||| ||| |||| || ||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 36112 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAA-ACATGCGAAATCGC 36170
| |||| || || | || | || ||||||||||| ||| || ||||| |
Sbjct 408502 GATACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATCAC 408560
Query 36171 AGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 36230
| || | ||| ||||| | || | |||||||| || || | |||||||||||||
Sbjct 408561 AATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGGC 408620
Query 36231 CACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTG 36290
|||| || || | ||| || ||||| ||||| || ||||| || ||||| || |
Sbjct 408621 CACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAACAG 408680
Query 36291 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC--ATG-TATCCACTTTTGAG 36347
| ||||| || || | | || ||| || ||| || ||| |||||| ||
Sbjct 408681 CAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAAAG 408740
Query 36348 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 36407
||||||| || || |||| ||| ||||| || || || ||||| || | ||| |
Sbjct 408741 CCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATATTCAC 408800
Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467
|| | || |||||||| ||| || ||||| | || || ||||||||||| |||| |
Sbjct 408801 GTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAACAT 408860
Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527
| || || || || || || || ||||| || | || || || | || || ||| |
Sbjct 408861 TCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTGAG 408920
Query 36528 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 36587
|||||| || | | ||| ||||| ||||| || || ||| ||||| || ||||| |
Sbjct 408921 AAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAACA 408980
Query 36588 CATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 36647
|||| || |||||| |||| || ||| ||||| | ||| ||| ||||||||||
Sbjct 408981 CATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTAG 409040
Query 36648 ATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689
| | ||||||||| || || ||||||||||||||||| ||||
Sbjct 409041 ACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658073728539280
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