Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1090 461 1e-124 seq305 257 2e-63 >seq1090 Length=275775 Score = 461 bits (510), Expect = 1e-124 Identities = 1501/2295 (65%), Gaps = 86/2295 (4%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || | | || || ||||| || | | ||| ||||| ||||| || || Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||| || ||||| || || | |||| || | || || || | | Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| ||| Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 65077 | ||||| | ||||||||| | ||||| || | ||| | || | |||| |||| Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT-TCTTTGGGAAT 261338 Query 65078 GT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 | | | | || || ||||| |||| | ||||| |||| || || || |||| Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATC 261278 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||||| | ||||| ||| || |||| | ||| |||| || | | ||||| || Sbjct 261277 CCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACC 261218 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 || | ||| | || || ||||| || || |||||||| | || ||||| || || Sbjct 261217 CGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCC 261158 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 || |||||| ||||| || || || ||||| || |||| | | ||| | | ||| Sbjct 261157 CATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACC 261098 Query 65315 GTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 65372 ||||| | ||| | || ||||| | |||||| ||| ||||| | || || Sbjct 261097 --ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTG 261040 Query 65373 NNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATC 65428 ||| || ||||| || ||||| | |||| ||| || || Sbjct 261039 TTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT----TCCTGGATACGTTTC 260984 Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 65488 || || || || | ||||| | ||||||||| || || || ||||| || ||||| || Sbjct 260983 ATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGT 260924 Query 65489 TTCGAAGATCTTCTTATTTAGATCTTGT--GCTTCCAGGCTATCAAATGGATAATTTAAG 65546 ||| || || | | ||| | || ||| || ||| ||| || | |||||| | | Sbjct 260923 TTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATG 260866 Query 65547 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 65606 ||||| | | || || || || || |||||||| || || || | |||||| |||| Sbjct 260865 AGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTA 260806 Query 65607 GAGATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 65664 || |||| | || ||| | | ||||| || || | |||||| ||||| |||||||| | Sbjct 260805 GAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTGC 260748 Query 65665 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCTCATCT 65717 | | ||||| || ||||| ||| ||| ||||| ||| | || Sbjct 260747 GCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC- 260689 Query 65718 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 ||||||||||||| || || |||| || || || || | |||| | | Sbjct 260688 ---ACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCT 260632 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | ||||| | || || ||||| | ||| || || || ||||| || | |||||||||| Sbjct 260631 GAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGA 260572 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 ||||| || ||||| | |||||| | || ||| | ||||| |||||||| | || Sbjct 260571 TTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGG 260512 Query 65898 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC 65956 ||||||||||| || ||| | || || | ||||| || | | ||| | |||| | Sbjct 260511 GATTCTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT---TCTGT-TAGCTTTGC 260457 Query 65957 TC----TTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAAT 66011 |||||||| | || || | | || || || || ||||| || | | | | Sbjct 260456 CGGCCTTTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGT 260398 Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 || ||||||| | |||||||| | ||||| || |||| || | ||| ||| |||| Sbjct 260397 CCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATA 260338 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAA-ATCTCTGGTTCTATGTTCCTCGTTTCC 66130 || | ||| || ||||||||||| ||| | || |||||||| | ||| || || || || Sbjct 260337 AACAAATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCC 260279 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 ||||||||||| | ||| | ||| | | || || ||||||| ||||||||||| || Sbjct 260278 GGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGAT 260219 Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250 ||| | | ||||| |||||| || |||||||| | ||| | || ||||| | Sbjct 260218 GGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAA 260159 Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 ||||| ||||| || | | ||||||||| || ||||| || |||| || | |||| Sbjct 260158 TACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCC 260099 Query 66311 ACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 | || ||||| | | |||||| || || || || || ||| || || | Sbjct 260098 CTTAGCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCATA 260041 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 || || | | | | | | | |||||||| ||| ||| | | |||| | | || Sbjct 260040 GCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGG 259981 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 ||||| ||||| ||| ||||| | || | ||| ||| || || || || || || Sbjct 259980 AAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGG 259921 Query 66489 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 ||||| | || || || || || || || ||||| || || ||||| ||| | Sbjct 259920 GTAAAGTAACGCTCGGACAACCAG-TTATAAGTTTCAATGGCCGAATCTATGTCCTCTCC 259862 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 |||||| ||||| || |||||||| | ||| || || || | ||| | ||||| || Sbjct 259861 ATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATT 259802 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 |||||||| | || || ||| | ||| ||||| ||||| |||||||| ||| || Sbjct 259801 CATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATC 259742 Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 66727 || ||||| | ||| |||||||||| ||| || ||| | || ||| | Sbjct 259741 ACGGTCGTATACAATGGCCGAGTTGAGGCGCTCCGAATTTTTCATGACCACA-------T 259689 Query 66728 AATACTTGAAATAATCGGA---GAATGTTTCCCATT-TTTAGGATTGACATAGTTGAATA 66783 ||| |||| ||||||| | || | ||| || | || | | || ||| | Sbjct 259688 TATA-ATGAA--AATCGGAAATCATTGATGCCCTTTGTCCAGTCTCGTCA---CTGACGA 259635 Query 66784 AATCCTCCA--TCACT--TCACT-----AAATAGtttttttGTTTCTTTGTGTAGATTTG 66834 ||| | || ||||| | ||| || | ||||| ||||||||||| | || | Sbjct 259634 AATGATGCAGGTCACTGATGACTTCCGAGAAAACCTTTTTAGTTTCTTTGTGCAAGTTGG 259575 Query 66835 ATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTG 66894 | || || || | ||| || | | |||||||| | ||| | ||| || ||||| | Sbjct 259574 ACACAGCAATGCGAGCCGCCAACAAAGCATAATCGGCATGATTTGTTGTGAGTGTGGCAG 259515 Query 66895 CTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGA 66954 || |||| || |||| | ||||||||| | ||||| || || ||| | || | || Sbjct 259514 CTGTTTCTGCGGCCAAATTGTCCAATTGTTGAGTTGTGACGCCGCAATACAAACCATTGA 259455 Query 66955 TAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATT 67014 | ||| | | | ||| | ||||| | || |||| | |||||| || || | Sbjct 259454 TTACCCTTAAGGTTATGGCCACTGGATCGACGAAGTCCATGTTGAGGCCATAGCA-AAGT 259396 Query 67015 TTCT-AATACGAGATGTGATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTT 67072 |||| || || || || || ||||| || ||| || | || ||| |||| ||||| Sbjct 259395 TTCTGGATGCGTGAAGTAATCTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCACGTTT 259337 Query 67073 AATGACAAACATTTT 67087 | ||||| | ||| Sbjct 259336 GACCACAAAAAGTTT 259322 >seq305 Length=710094 Score = 257 bits (284), Expect = 2e-63 Identities = 481/702 (69%), Gaps = 5/702 (1%) Strand=Plus/Plus Query 35992 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 36051 |||||| |||||||| ||||| ||| | ||||||||||| || || | || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 36052 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATAT 36111 ||| | || | ||||| ||||| ||||| || ||||| ||| |||| || || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 36112 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAA-ACATGCGAAATCGC 36170 | |||| || || | || | || ||||||||||| ||| || ||||| | Sbjct 408502 GATACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATCAC 408560 Query 36171 AGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 36230 | || | ||| ||||| | || | |||||||| || || | ||||||||||||| Sbjct 408561 AATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGGC 408620 Query 36231 CACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTG 36290 |||| || || | ||| || ||||| ||||| || ||||| || ||||| || | Sbjct 408621 CACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAACAG 408680 Query 36291 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC--ATG-TATCCACTTTTGAG 36347 | ||||| || || | | || ||| || ||| || ||| |||||| || Sbjct 408681 CAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAAAG 408740 Query 36348 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 36407 ||||||| || || |||| ||| ||||| || || || ||||| || | ||| | Sbjct 408741 CCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATATTCAC 408800 Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 || | || |||||||| ||| || ||||| | || || ||||||||||| |||| | Sbjct 408801 GTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAACAT 408860 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 | || || || || || || || ||||| || | || || || | || || ||| | Sbjct 408861 TCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTGAG 408920 Query 36528 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 36587 |||||| || | | ||| ||||| ||||| || || ||| ||||| || ||||| | Sbjct 408921 AAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAACA 408980 Query 36588 CATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 36647 |||| || |||||| |||| || ||| ||||| | ||| ||| |||||||||| Sbjct 408981 CATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTAG 409040 Query 36648 ATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | | ||||||||| || || ||||||||||||||||| |||| Sbjct 409041 ACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658073728539280