Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1090 517 2e-141 seq305 271 1e-67 >seq1090 Length=275775 Score = 517 bits (572), Expect = 2e-141 Identities = 1258/1880 (67%), Gaps = 42/1880 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || | | || || ||||| || | | ||| ||||| ||||| || || Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| |||||||| || || | |||| || | || || || | | Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| ||| Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 78956 | ||||| | ||||||||| | ||||| || | ||| | | || |||| |||| Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGT-ATTTCTTTGGGAAT 261338 Query 78957 GT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 | | | | || || ||||| |||| | ||||| |||| || || || |||| Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATC 261278 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||||| | ||||| ||| || |||| | ||| |||| || | | ||||| || Sbjct 261277 CCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACC 261218 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 || | ||| | || || ||||| || || || ||||| | | |||||| || || Sbjct 261217 CGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCC 261158 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 || |||||| ||||| || ||||| ||||| || |||| | | ||| | | ||| Sbjct 261157 CATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACC 261098 Query 79194 GTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACA 79251 ||| | | ||| | || ||||| | |||||||||| ||||| | || || Sbjct 261097 --ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTG 261040 Query 79252 TTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAA 79311 ||||| | |||||||| || ||||| || || | ||||| || |||||||| Sbjct 261039 TTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAG 260980 Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCG 79371 || || || | ||| || ||||||||||| || || || || || || ||||| ||||| Sbjct 260979 GGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCA 260920 Query 79372 AAAATCTTCTTATTGAGATCTTG--TGCTTCTAGGCTATCAAATGGATAATTTAAGAGAA 79429 || || | | ||| | || ||| || || ||| || | |||||| | ||||| Sbjct 260919 AATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAA 260862 Query 79430 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489 | | | || || || || || |||||||| || || || | |||||| ||||| | Sbjct 260861 TTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAG-AT 260803 Query 79490 TTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGAC 79547 |||| | || ||| | | ||||| || || | |||||| ||||| |||||||| | | Sbjct 260802 TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTGCGCGC 260744 Query 79548 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATTA 79600 | ||||| || ||| | ||| ||| ||||| ||| | || | Sbjct 260743 CACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC----A 260688 Query 79601 CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 79660 |||||||||||| | || |||| || || || || | |||| | | | || Sbjct 260687 CAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAAT 260628 Query 79661 ATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTAC 79720 ||| | ||||| ||||| | || || || |||||||| || | |||||||||||||| Sbjct 260627 ATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTAC 260568 Query 79721 TCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATT 79780 | || ||||| | |||||| | || ||| | ||||| |||||||| | || |||| Sbjct 260567 TTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATT 260508 Query 79781 CTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCT--TTTCTC 79837 ||||||| || ||| | || || | ||||| || | || || || | | Sbjct 260507 CTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT--TCTGTTAGCTTTGCCGGCCT 260451 Query 79838 TTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 ||||||||| | || || | | || || || || ||||| || || | | ||| ||| Sbjct 260450 TTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGA 260392 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956 |||| || ||||||||| | ||||| || || | || | || ||| |||||| | | Sbjct 260391 CATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAA 260332 Query 79957 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015 || || ||||||||||| ||| || |||||||||| | |||||| || || || ||||| Sbjct 260331 TCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATT 260273 Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075 |||||| | ||| | ||| | | || || |||||||| ||||||||||| ||||| | Sbjct 260272 CTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAA 260213 Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135 | || || |||||| || |||||||| | ||| | || ||||| | ||||| Sbjct 260212 TGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCT 260153 Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195 ||||| || | | ||||||||| || ||||| || |||| || | |||| | || Sbjct 260152 TAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGC 260093 Query 80196 ACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 ||||| | | |||||| || || || || || ||| || || | || || Sbjct 260092 GCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCATAGCACAC 260035 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 | | | | | | | |||||||| || ||| ||| |||| | | || ||||| Sbjct 260034 TGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGGAAACAA 259975 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||| ||| ||||| | || | ||| ||| || || || || || || ||||| Sbjct 259974 GAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGGGTAAAG 259915 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | || |||| || || || ||||| || || ||||| ||| | |||||| Sbjct 259914 TAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTCCATGAATA 259855 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 ||||| || |||||||| | ||| || || || | ||| | ||||| ||| |||||| Sbjct 259854 CCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTC 259795 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 || | || || ||| | ||| ||||| ||||| |||||||| ||| || || ||| Sbjct 259794 AATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATCACGGTCG 259735 Query 80554 TAAATAATAACCGAGTTGAG 80573 || | ||| |||||||||| Sbjct 259734 TATACAATGGCCGAGTTGAG 259715 >seq305 Length=710094 Score = 271 bits (300), Expect = 1e-67 Identities = 489/706 (69%), Gaps = 13/706 (2%) Strand=Plus/Plus Query 49794 ATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 49853 ||| || |||||||| ||||| ||| | ||||||||||| || || | || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 49854 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG--AT 49911 ||| | || | ||||| ||||| ||||| || ||||| ||| |||| || || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 49912 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAA-ACATGCGAAATC 49970 ||| | ||| | | || |||| | || ||||||||||| ||| || ||||| Sbjct 408502 GATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATC 408558 Query 49971 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 50030 || |||| ||| ||||| | || || |||||||| || || | ||||||||||| Sbjct 408559 ACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAG 408618 Query 50031 GCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGAAGATTCCTTCT 50088 |||||| || || | ||| || ||||| ||||| || | | ||| ||| || ||||| Sbjct 408619 GCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAA--GAATATGCCTTCA 408676 Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC--ATG-TATCCACTTT 50145 || || ||||| || | | | || ||| || | || || ||| |||||| Sbjct 408677 ACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGAC 408736 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 ||||||||| || || |||| ||| ||||| ||||| |||||||| || | ||| Sbjct 408737 AAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATAT 408796 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | || | || |||||||| ||| || || || | || || ||||||||||| ||| Sbjct 408797 TCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGA 408856 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 | || || || || ||||| || || ||||| || | || || || | ||||| ||| Sbjct 408857 ACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCT 408916 Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385 | |||||| || | | ||| ||||| ||||| || || ||| ||||| || ||| Sbjct 408917 TGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCC 408976 Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCT 50445 || ||||| || |||| | |||| ||| ||| ||||| | ||| ||| |||||| Sbjct 408977 AACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCT 409036 Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||||| | ||| ||||| || || ||||||||||||||||| |||| Sbjct 409037 TTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718160682588880