Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 517 2e-141
seq305 271 1e-67
>seq1090
Length=275775
Score = 517 bits (572), Expect = 2e-141
Identities = 1258/1880 (67%), Gaps = 42/1880 (2%)
Strand=Plus/Minus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
|||||||| || | | || || ||||| || | | ||| ||||| ||||| || ||
Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| |||| |||||||| || || | |||| || | || || || | |
Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
|| ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| |||
Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 78956
| ||||| | ||||||||| | ||||| || | ||| | | || |||| ||||
Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGT-ATTTCTTTGGGAAT 261338
Query 78957 GT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013
| | | | || || ||||| |||| | ||||| |||| || || || ||||
Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATC 261278
Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073
||||| | ||||| ||| || |||| | ||| |||| || | | ||||| ||
Sbjct 261277 CCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACC 261218
Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133
|| | ||| | || || ||||| || || || ||||| | | |||||| || ||
Sbjct 261217 CGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCC 261158
Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193
|| |||||| ||||| || ||||| ||||| || |||| | | ||| | | |||
Sbjct 261157 CATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACC 261098
Query 79194 GTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACA 79251
||| | | ||| | || ||||| | |||||||||| ||||| | || ||
Sbjct 261097 --ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTG 261040
Query 79252 TTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAA 79311
||||| | |||||||| || ||||| || || | ||||| || ||||||||
Sbjct 261039 TTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAG 260980
Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCG 79371
|| || || | ||| || ||||||||||| || || || || || || ||||| |||||
Sbjct 260979 GGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCA 260920
Query 79372 AAAATCTTCTTATTGAGATCTTG--TGCTTCTAGGCTATCAAATGGATAATTTAAGAGAA 79429
|| || | | ||| | || ||| || || ||| || | |||||| | |||||
Sbjct 260919 AATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAA 260862
Query 79430 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489
| | | || || || || || |||||||| || || || | |||||| ||||| |
Sbjct 260861 TTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAG-AT 260803
Query 79490 TTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGAC 79547
|||| | || ||| | | ||||| || || | |||||| ||||| |||||||| | |
Sbjct 260802 TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTGCGCGC 260744
Query 79548 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATTA 79600
| ||||| || ||| | ||| ||| ||||| ||| | || |
Sbjct 260743 CACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC----A 260688
Query 79601 CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 79660
|||||||||||| | || |||| || || || || | |||| | | | ||
Sbjct 260687 CAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAAT 260628
Query 79661 ATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTAC 79720
||| | ||||| ||||| | || || || |||||||| || | ||||||||||||||
Sbjct 260627 ATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTAC 260568
Query 79721 TCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATT 79780
| || ||||| | |||||| | || ||| | ||||| |||||||| | || ||||
Sbjct 260567 TTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATT 260508
Query 79781 CTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCT--TTTCTC 79837
||||||| || ||| | || || | ||||| || | || || || | |
Sbjct 260507 CTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT--TCTGTTAGCTTTGCCGGCCT 260451
Query 79838 TTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896
||||||||| | || || | | || || || || ||||| || || | | ||| |||
Sbjct 260450 TTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGA 260392
Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956
|||| || ||||||||| | ||||| || || | || | || ||| |||||| | |
Sbjct 260391 CATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAA 260332
Query 79957 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 80015
|| || ||||||||||| ||| || |||||||||| | |||||| || || || |||||
Sbjct 260331 TCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATT 260273
Query 80016 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 80075
|||||| | ||| | ||| | | || || |||||||| ||||||||||| ||||| |
Sbjct 260272 CTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAA 260213
Query 80076 AACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 80135
| || || |||||| || |||||||| | ||| | || ||||| | |||||
Sbjct 260212 TGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCT 260153
Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195
||||| || | | ||||||||| || ||||| || |||| || | |||| | ||
Sbjct 260152 TAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGC 260093
Query 80196 ACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253
||||| | | |||||| || || || || || ||| || || | || ||
Sbjct 260092 GCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCATAGCACAC 260035
Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
| | | | | | | |||||||| || ||| ||| |||| | | || |||||
Sbjct 260034 TGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGGAAACAA 259975
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
||||| ||| ||||| | || | ||| ||| || || || || || || |||||
Sbjct 259974 GAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGGGTAAAG 259915
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433
| || |||| || || || ||||| || || ||||| ||| | ||||||
Sbjct 259914 TAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTCCATGAATA 259855
Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493
||||| || |||||||| | ||| || || || | ||| | ||||| ||| ||||||
Sbjct 259854 CCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTC 259795
Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553
|| | || || ||| | ||| ||||| ||||| |||||||| ||| || || |||
Sbjct 259794 AATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATCACGGTCG 259735
Query 80554 TAAATAATAACCGAGTTGAG 80573
|| | ||| ||||||||||
Sbjct 259734 TATACAATGGCCGAGTTGAG 259715
>seq305
Length=710094
Score = 271 bits (300), Expect = 1e-67
Identities = 489/706 (69%), Gaps = 13/706 (2%)
Strand=Plus/Plus
Query 49794 ATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 49853
||| || |||||||| ||||| ||| | ||||||||||| || || | ||
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 49854 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG--AT 49911
||| | || | ||||| ||||| ||||| || ||||| ||| |||| || ||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 49912 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAA-ACATGCGAAATC 49970
||| | ||| | | || |||| | || ||||||||||| ||| || |||||
Sbjct 408502 GATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATC 408558
Query 49971 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 50030
|| |||| ||| ||||| | || || |||||||| || || | |||||||||||
Sbjct 408559 ACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAG 408618
Query 50031 GCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAAAAGAAGATTCCTTCT 50088
|||||| || || | ||| || ||||| ||||| || | | ||| ||| || |||||
Sbjct 408619 GCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAA--GAATATGCCTTCA 408676
Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC--ATG-TATCCACTTT 50145
|| || ||||| || | | | || ||| || | || || ||| ||||||
Sbjct 408677 ACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGAC 408736
Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205
||||||||| || || |||| ||| ||||| ||||| |||||||| || | |||
Sbjct 408737 AAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATAT 408796
Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265
| || | || |||||||| ||| || || || | || || ||||||||||| |||
Sbjct 408797 TCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGA 408856
Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
| || || || || ||||| || || ||||| || | || || || | ||||| |||
Sbjct 408857 ACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCT 408916
Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385
| |||||| || | | ||| ||||| ||||| || || ||| ||||| || |||
Sbjct 408917 TGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCC 408976
Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCT 50445
|| ||||| || |||| | |||| ||| ||| ||||| | ||| ||| ||||||
Sbjct 408977 AACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCT 409036
Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491
||||| | ||| ||||| || || ||||||||||||||||| ||||
Sbjct 409037 TTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718160682588880
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