Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq305 246 3e-60 >seq305 Length=710094 Score = 246 bits (272), Expect = 3e-60 Identities = 386/544 (71%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAA-ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13912 |||| ||||| || || ||| |||||||||||||| | || || || | || || Sbjct 408530 AGATACTTAAACATCAATACA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAG 408588 Query 13913 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972 ||||| || |||||||| || ||||| | || ||||| || ||||| || || | || Sbjct 408589 CTCGTTGGAGAATGTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGC 408648 Query 13973 AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 ||| ||| |||||||| || ||||| |||||||| ||||||| ||||| ||||| Sbjct 408649 AAAACTGCCGCTGAAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAA 408708 Query 14033 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14092 || | ||||||||| |||||| |||| |||| |||||| | Sbjct 408709 ATTAGCAGAATCCGATGATATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGG 408768 Query 14093 CATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATC 14152 ||| |||||||| ||||| ||||||||||| | | | | | ||| || || || Sbjct 408769 CATAGTTTCAATGGCATTGAATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTC 408828 Query 14153 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 |||||| | ||| |||||||| ||||| | || |||||||| ||||| || ||||| || Sbjct 408829 AATAAGAATGCTGTACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAA 408888 Query 14213 GCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAA 14271 ||| | ||||| | ||| || || ||| ||||||| ||| | | ||| ||||||| Sbjct 408889 GCAGCGGGCTTCAGTTACTTGCACCTCTTGAG-AAAATCTCTCGACAAGATTCTCATTAA 408947 Query 14272 CTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14331 |||| ||||| || ||||| || ||||| | | ||| || ||| || ||||| Sbjct 408948 CTATGCCATCGGAGGCAGCAAAGAAAGCCAACACATGGGAAATGAAATAT--CT-TTCAT 409004 Query 14332 TGT---TGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14388 ||| ||||||| | ||| || || | ||| ||||| ||||| ||||| ||||| |||| Sbjct 409005 TGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCC 409064 Query 14389 AAAA 14392 |||| Sbjct 409065 AAAA 409068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479655788942800