Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq305 246 3e-60
>seq305
Length=710094
Score = 246 bits (272), Expect = 3e-60
Identities = 386/544 (71%), Gaps = 10/544 (2%)
Strand=Plus/Plus
Query 13854 AGATGTTTAAAAATTAA-ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13912
|||| ||||| || || ||| |||||||||||||| | || || || | || ||
Sbjct 408530 AGATACTTAAACATCAATACA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAG 408588
Query 13913 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972
||||| || |||||||| || ||||| | || ||||| || ||||| || || | ||
Sbjct 408589 CTCGTTGGAGAATGTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGC 408648
Query 13973 AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032
||| ||| |||||||| || ||||| |||||||| ||||||| ||||| |||||
Sbjct 408649 AAAACTGCCGCTGAAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAA 408708
Query 14033 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14092
|| | ||||||||| |||||| |||| |||| |||||| |
Sbjct 408709 ATTAGCAGAATCCGATGATATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGG 408768
Query 14093 CATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATC 14152
||| |||||||| ||||| ||||||||||| | | | | | ||| || || ||
Sbjct 408769 CATAGTTTCAATGGCATTGAATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTC 408828
Query 14153 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212
|||||| | ||| |||||||| ||||| | || |||||||| ||||| || ||||| ||
Sbjct 408829 AATAAGAATGCTGTACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAA 408888
Query 14213 GCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAA 14271
||| | ||||| | ||| || || ||| ||||||| ||| | | ||| |||||||
Sbjct 408889 GCAGCGGGCTTCAGTTACTTGCACCTCTTGAG-AAAATCTCTCGACAAGATTCTCATTAA 408947
Query 14272 CTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14331
|||| ||||| || ||||| || ||||| | | ||| || ||| || |||||
Sbjct 408948 CTATGCCATCGGAGGCAGCAAAGAAAGCCAACACATGGGAAATGAAATAT--CT-TTCAT 409004
Query 14332 TGT---TGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14388
||| ||||||| | ||| || || | ||| ||||| ||||| ||||| ||||| ||||
Sbjct 409005 TGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCC 409064
Query 14389 AAAA 14392
||||
Sbjct 409065 AAAA 409068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479655788942800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |