Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq305 223 3e-53 >seq305 Length=710094 Score = 223 bits (246), Expect = 3e-53 Identities = 383/545 (70%), Gaps = 12/545 (2%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAA-ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700 |||| ||||| || || ||| |||||||||||||| | || || || | || || Sbjct 408530 AGATACTTAAACATCAATACA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAG 408588 Query 13701 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760 ||||| || |||||||| || ||||| | || ||||| || ||||| || || | || Sbjct 408589 CTCGTTGGAGAATGTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGC 408648 Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 || ||| |||||||| || ||||| |||||||| ||||||| ||||| ||||| Sbjct 408649 AAAACTGCCGCTGAAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAA 408708 Query 13821 CGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 || | |||||||||| |||||| |||| |||| |||||| | Sbjct 408709 ATTAGCAGAATCCGATGATATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGG 408768 Query 13881 CATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC 13940 ||| ||||| || ||||||||||||| ||| | | | | | ||| || || || Sbjct 408769 CATAGTTTCAATGGCATTGAATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTC 408828 Query 13941 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 |||||| | ||| |||||||| ||||| | || || ||||| ||||| || ||||| || Sbjct 408829 AATAAGAATGCTGTACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAA 408888 Query 14001 ACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAG-TTTTCATTA 14058 || | ||||| | ||| ||||| ||| ||||||| || | |||| || |||||| Sbjct 408889 GCAGCGGGCTTCAGTTACTTGCACCTCTTGAG-AAAATCTCTC-GACAAGATTCTCATTA 408946 Query 14059 ACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA 14118 || || ||||| || ||||| || ||||| | | ||| || ||| || |||| Sbjct 408947 ACTATGCCATCGGAGGCAGCAAAGAAAGCCAACACATGGGAAATGAAATAT--CT-TTCA 409003 Query 14119 TTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTC 14175 |||| ||||||| | ||| || | | ||| ||||| ||||| ||||| ||||| ||| Sbjct 409004 TTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTC 409063 Query 14176 CAAAA 14180 ||||| Sbjct 409064 CAAAA 409068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478516760420880