Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 439 3e-118
seq305 233 3e-56
>seq1090
Length=275775
Score = 439 bits (486), Expect = 3e-118
Identities = 1212/1838 (66%), Gaps = 34/1838 (2%)
Strand=Plus/Minus
Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898
||| |||||||| || || || || |||| || ||||| || || | |||
Sbjct 261538 ATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTT 261479
Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958
| ||| | || ||||| | || ||||| | || |||||||| || ||||| |||||
Sbjct 261478 GCCGTAGTTGGGCTCGGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCC 261419
Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 71017
| || ||||||||||| ||| | ||||| | ||||||||| | ||||| || |
Sbjct 261418 ACGATCAGCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAG 261359
Query 71018 CTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCAATAA 71074
||| | || | |||| |||| | | | | || || ||||| |||| | |||||
Sbjct 261358 CTCTCGTATT-TCTTTGGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAA 261300
Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134
| ||||||| || || |||| ||||| | ||||| ||| || |||| | ||||
Sbjct 261299 TTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGAT 261240
Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194
|||| || | | ||||| || || | ||| | || || ||||| || || ||||
Sbjct 261239 GATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACG 261180
Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254
|||| | | ||||| || |||| |||||| ||||| || || || ||||| || ||||
Sbjct 261179 GTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCA 261120
Query 71255 CCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATT 71312
| || ||| | | ||||||| | || ||| | || ||||| | ||||||
Sbjct 261119 GGAGCAGCGAATTGCGTACACCATGT--TTGGCAATTCTTTCCTTTAGGGCAGCCCAATC 261062
Query 71313 CCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTA 71372
||| ||||| | || || || || || || |
Sbjct 261061 CCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGG 261002
Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432
||||| ||| || || || || || |||| ||| || | ||||||||| || || ||
Sbjct 261001 GCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAA 260942
Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT--GCTTCCGGGCTA 71490
|| ||||| ||||| ||||| || || | | ||| | || ||| || ||| |||
Sbjct 260941 AGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTT 260884
Query 71491 TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATA 71550
|| | |||||| | |||||| | | || || || || || || ||||| || ||
Sbjct 260883 TCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATG 260824
Query 71551 GGTCTGTGTCTCTTATTAGAAATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTA 71608
|| | ||||| |||||| |||| | || ||| | | ||||| || || | |||||
Sbjct 260823 GGACGATGTCTGAGATTAGAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTA 260766
Query 71609 TAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAA 71668
| ||||| |||||||| | | | ||||| || ||| | ||| ||| ||||
Sbjct 260765 TGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAA 260706
Query 71669 ATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTA 71725
| | || | ||||||| ||||| | || || |||| || || || || |
Sbjct 260705 AAGTTTTTTCGGGCGTCACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGA 260646
Query 71726 CCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTC 71785
|||| | | | ||||| | ||||| ||||| | ||| || || || ||||| |
Sbjct 260645 TTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGC 260586
Query 71786 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTAC 71845
| | ||||||||||||||| || ||||| | |||||| | || || | ||||| |
Sbjct 260585 CAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTC 260526
Query 71846 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTC 71904
||||||| | || ||||||||||| || ||| | || || | ||||| || | ||
Sbjct 260525 CAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT--TC 260469
Query 71905 TTGTATCTCTTTTCTC--TTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAA 71961
| || || | | ||||||||| | || || | | || || || || |||||
Sbjct 260468 TGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAG 260410
Query 71962 GCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT 72021
| | | | ||| ||||||| | |||||||| | ||||| || || | || |
Sbjct 260409 ACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCC 260350
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 72080
|| ||| |||||| | ||| || ||||||||||| ||| || |||||||||| | |||
Sbjct 260349 ACACGTCGCATAAACAAATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATG 260291
Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
||| || || || ||||||||||| | ||| | ||| | | || || |||||||| ||
Sbjct 260290 CTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGG 260231
Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200
||||||||| ||||| | | || || |||||| || |||||||| | ||| | ||
Sbjct 260230 TTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGC 260171
Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260
||||| | ||||| ||||| || | | ||||||||| | ||||| || ||||
Sbjct 260170 AACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGC 260111
Query 72261 GATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318
|| | |||| | || ||||| | || |||||| || || || || || |
Sbjct 260110 TATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGAT 260053
Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378
|| || || | || || | | | | | | | |||||||| ||| ||| | | |
Sbjct 260052 TTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACC 259993
Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438
||| | | || ||||| ||||| ||| ||||| | || | ||| ||| || ||
Sbjct 259992 ATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTG 259933
Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498
|| || || || ||||| | || |||| || || || ||||| || || |||
Sbjct 259932 GGCGATGCATGGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAATCT 259873
Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558
|| ||| | ||| || ||||| || |||||||| | |||||| || || | ||| |
Sbjct 259872 ATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCA 259813
Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618
||||| ||| |||||||| | || || ||| | ||| ||||| ||||| ||||||
Sbjct 259812 ATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTG 259753
Query 72619 TATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656
|| ||| || || ||||| | ||| |||| |||||
Sbjct 259752 TAGCCAAAATCACGGTCGTATACAATGGCCGAGTTGAG 259715
>seq305
Length=710094
Score = 233 bits (258), Expect = 3e-56
Identities = 481/707 (68%), Gaps = 15/707 (2%)
Strand=Plus/Plus
Query 41899 ATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 41958
|||||| | ||||| ||||| ||| | ||||||||||| || || | ||
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 41959 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 42018
||| | || | ||||| ||||| ||||| || ||||| ||| |||| || ||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTAT----CT 408497
Query 42019 TACTGTTTC-TTCACTCGGTGGA----TACAATAAATGTTTAAACATCAA-ACATGCGAA 42072
| || | | ||| || | ||| | || | || ||||||||||| ||| || ||
Sbjct 408498 CAATGATACGTTCTCT-GCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAA 408555
Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132
||| || |||| ||| || || | || | |||||||| || || | ||||||||
Sbjct 408556 ATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCAT 408615
Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192
||||||||| || || | ||| || || || ||||| || ||||| || |||||
Sbjct 408616 TAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTC 408675
Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC--ATG-TATCCACTT 42249
|| || ||||| || || | | || ||| || ||| || ||| ||||||
Sbjct 408676 AACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGA 408735
Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309
||||||||| || || |||| ||| ||||| ||||| |||||||| || | |||
Sbjct 408736 CAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATA 408795
Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369
| || | || |||||||| ||| || || || | || || |||||||| || ||
Sbjct 408796 TTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTG 408855
Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429
|| || || || || ||||| || || ||||| || | ||| || || || || || ||
Sbjct 408856 AACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTC 408915
Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489
| | |||||| || | | ||| || || ||||| || || ||| ||||| || ||
Sbjct 408916 TTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGC 408975
Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549
||| ||||| || |||||| |||| | ||| | ||| | ||| ||| |||||
Sbjct 408976 CAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATC 409035
Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596
|||||| | ||| ||||| || || |||||||||||||| || ||||
Sbjct 409036 TTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671038176771920
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