Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1090 439 3e-118 seq305 233 3e-56 >seq1090 Length=275775 Score = 439 bits (486), Expect = 3e-118 Identities = 1212/1838 (66%), Gaps = 34/1838 (2%) Strand=Plus/Minus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||| |||||||| || || || || |||| || ||||| || || | ||| Sbjct 261538 ATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTT 261479 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | ||| | || ||||| | || ||||| | || |||||||| || ||||| ||||| Sbjct 261478 GCCGTAGTTGGGCTCGGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCC 261419 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 71017 | || ||||||||||| ||| | ||||| | ||||||||| | ||||| || | Sbjct 261418 ACGATCAGCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAG 261359 Query 71018 CTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTGCAATAA 71074 ||| | || | |||| |||| | | | | || || ||||| |||| | ||||| Sbjct 261358 CTCTCGTATT-TCTTTGGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAA 261300 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 | ||||||| || || |||| ||||| | ||||| ||| || |||| | |||| Sbjct 261299 TTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGAT 261240 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 |||| || | | ||||| || || | ||| | || || ||||| || || |||| Sbjct 261239 GATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACG 261180 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 |||| | | ||||| || |||| |||||| ||||| || || || ||||| || |||| Sbjct 261179 GTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCA 261120 Query 71255 CCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATT 71312 | || ||| | | ||||||| | || ||| | || ||||| | |||||| Sbjct 261119 GGAGCAGCGAATTGCGTACACCATGT--TTGGCAATTCTTTCCTTTAGGGCAGCCCAATC 261062 Query 71313 CCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTA 71372 ||| ||||| | || || || || || || | Sbjct 261061 CCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGG 261002 Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 ||||| ||| || || || || || |||| ||| || | ||||||||| || || || Sbjct 261001 GCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAA 260942 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT--GCTTCCGGGCTA 71490 || ||||| ||||| ||||| || || | | ||| | || ||| || ||| ||| Sbjct 260941 AGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTT 260884 Query 71491 TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATA 71550 || | |||||| | |||||| | | || || || || || || ||||| || || Sbjct 260883 TCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATG 260824 Query 71551 GGTCTGTGTCTCTTATTAGAAATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTA 71608 || | ||||| |||||| |||| | || ||| | | ||||| || || | ||||| Sbjct 260823 GGACGATGTCTGAGATTAGAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTA 260766 Query 71609 TAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAA 71668 | ||||| |||||||| | | | ||||| || ||| | ||| ||| |||| Sbjct 260765 TGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAA 260706 Query 71669 ATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTA 71725 | | || | ||||||| ||||| | || || |||| || || || || | Sbjct 260705 AAGTTTTTTCGGGCGTCACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGA 260646 Query 71726 CCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTC 71785 |||| | | | ||||| | ||||| ||||| | ||| || || || ||||| | Sbjct 260645 TTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGC 260586 Query 71786 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTAC 71845 | | ||||||||||||||| || ||||| | |||||| | || || | ||||| | Sbjct 260585 CAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTC 260526 Query 71846 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTC 71904 ||||||| | || ||||||||||| || ||| | || || | ||||| || | || Sbjct 260525 CAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT--TC 260469 Query 71905 TTGTATCTCTTTTCTC--TTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAA 71961 | || || | | ||||||||| | || || | | || || || || ||||| Sbjct 260468 TGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAG 260410 Query 71962 GCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT 72021 | | | | ||| ||||||| | |||||||| | ||||| || || | || | Sbjct 260409 ACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCC 260350 Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 72080 || ||| |||||| | ||| || ||||||||||| ||| || |||||||||| | ||| Sbjct 260349 ACACGTCGCATAAACAAATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATG 260291 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||| || || || ||||||||||| | ||| | ||| | | || || |||||||| || Sbjct 260290 CTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGG 260231 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 ||||||||| ||||| | | || || |||||| || |||||||| | ||| | || Sbjct 260230 TTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGC 260171 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 ||||| | ||||| ||||| || | | ||||||||| | ||||| || |||| Sbjct 260170 AACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGC 260111 Query 72261 GATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 || | |||| | || ||||| | || |||||| || || || || || | Sbjct 260110 TATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGAT 260053 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || || || | || || | | | | | | | |||||||| ||| ||| | | | Sbjct 260052 TTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACC 259993 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 ||| | | || ||||| ||||| ||| ||||| | || | ||| ||| || || Sbjct 259992 ATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTG 259933 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || || || || ||||| | || |||| || || || ||||| || || ||| Sbjct 259932 GGCGATGCATGGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAATCT 259873 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 || ||| | ||| || ||||| || |||||||| | |||||| || || | ||| | Sbjct 259872 ATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCA 259813 Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 ||||| ||| |||||||| | || || ||| | ||| ||||| ||||| |||||| Sbjct 259812 ATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTG 259753 Query 72619 TATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 || ||| || || ||||| | ||| |||| ||||| Sbjct 259752 TAGCCAAAATCACGGTCGTATACAATGGCCGAGTTGAG 259715 >seq305 Length=710094 Score = 233 bits (258), Expect = 3e-56 Identities = 481/707 (68%), Gaps = 15/707 (2%) Strand=Plus/Plus Query 41899 ATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 41958 |||||| | ||||| ||||| ||| | ||||||||||| || || | || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 41959 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 42018 ||| | || | ||||| ||||| ||||| || ||||| ||| |||| || || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTAT----CT 408497 Query 42019 TACTGTTTC-TTCACTCGGTGGA----TACAATAAATGTTTAAACATCAA-ACATGCGAA 42072 | || | | ||| || | ||| | || | || ||||||||||| ||| || || Sbjct 408498 CAATGATACGTTCTCT-GCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAA 408555 Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 ||| || |||| ||| || || | || | |||||||| || || | |||||||| Sbjct 408556 ATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCAT 408615 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 ||||||||| || || | ||| || || || ||||| || ||||| || ||||| Sbjct 408616 TAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTC 408675 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC--ATG-TATCCACTT 42249 || || ||||| || || | | || ||| || ||| || ||| |||||| Sbjct 408676 AACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGA 408735 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||||| || || |||| ||| ||||| ||||| |||||||| || | ||| Sbjct 408736 CAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATA 408795 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | || | || |||||||| ||| || || || | || || |||||||| || || Sbjct 408796 TTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTG 408855 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || || || || || ||||| || || ||||| || | ||| || || || || || || Sbjct 408856 AACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTC 408915 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | |||||| || | | ||| || || ||||| || || ||| ||||| || || Sbjct 408916 TTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGC 408975 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 ||| ||||| || |||||| |||| | ||| | ||| | ||| ||| ||||| Sbjct 408976 CAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATC 409035 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 |||||| | ||| ||||| || || |||||||||||||| || |||| Sbjct 409036 TTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671038176771920