Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq326 165 1e-35 seq1090 145 1e-29 seq305 143 4e-29 seq310 111 2e-19 seq340 84.2 3e-11 >seq326 Length=702362 Score = 165 bits (182), Expect = 1e-35 Identities = 414/624 (66%), Gaps = 4/624 (1%) Strand=Plus/Plus Query 70001 CACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGA 70060 ||||| ||| |||||||| | || | |||||||| |||||| ||||| || || Sbjct 509701 CACATATGGGATGGCAACAGCACACGCGACTTTTTGGATAAGCTCGGTTTCACGGATCGA 509760 Query 70061 CAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTAT 70120 | || || ||| |||| || || || || || |||||| | || | || | ||||| Sbjct 509761 GAGGAAGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTAC 509820 Query 70121 GTAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTG 70178 | ||| | || | ||||| ||||||| || ||| | | ||| | ||| Sbjct 509821 CGAACTTGCCACGATA-ACTATGACAACGAGGGTGTGGACCAACTAAA-ACAGGTTATTC 509878 Query 70179 ACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAG 70238 | || | || ||||| || || | ||| | |||| | | |||||||| | Sbjct 509879 ATACAATACGCACTAATCCCGATGACAGACGTATCATGATGTCCGCTTGGAATCCCATGG 509938 Query 70239 ATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATG 70298 | ||| || ||||| | || || ||||| || ||||| |||||||| | ||| Sbjct 509939 ACATGCCGCAGATGGCTTTGCCTCCCTGTCATTGCTTGGCCCAGTTTTATGTTGCCAATG 509998 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 | | | || || | | ||||| | ||||||||||||||| | || ||||| || | Sbjct 509999 GTGAGCTATCTTGTCAATTATATCAACGCAGTGCCGACATGGGCTTAGGAGTACCATTCA 510058 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 ||||||| ||| | ||||||| | |||||||| ||||| || ||||| || | Sbjct 510059 ACATTGCCTCATATGCCTTGTTGACCTATATGATTGCCCACATAACTGGCCTAAAGCCTG 510118 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 || || |||||||| | ||||| || || || ||| || ||| | || ||||| | Sbjct 510119 GTGATTTTGTACACACATTGGGCGATGCCCATGTATATAAGAACCACGTTGAACCATTGA 510178 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTG 70538 || |||| | |||| | || |||||||||||||| || | |||||||| | Sbjct 510179 GGGAGCAATTAAAACGCAAACCCAGACCTTTTCCCAAATTGATAATCAAACGTAAAGTAG 510238 Query 70539 AAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTA 70598 || ||||||| ||||| | |||||||| ||| | |||| | ||||| || | Sbjct 510239 AAGATATTGAGGACTTTAAATTTGAAGATTTCGAAATTGTCGATTACAAACCATATCCAA 510298 Query 70599 AGATTCCCATGGTTCTGGCTGTTT 70622 | |||| |||| ||||||||| Sbjct 510299 AAATTCAAATGGAAATGGCTGTTT 510322 >seq1090 Length=275775 Score = 145 bits (160), Expect = 1e-29 Identities = 320/472 (68%), Gaps = 6/472 (1%) Strand=Plus/Plus Query 97792 TGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTT 97851 |||| |||| || |||||||||||| | ||| ||||| | | ||||| |||| ||| Sbjct 261114 TGCTCCTGGCCCCCATGCCCACGGCTTCGACTGCCCAAATTATGGGCAACAATGAAGCTT 261173 Query 97852 TTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCA-ATTG 97910 | ||||||| ||| |||||||| || | || | || || || || | |||| Sbjct 261174 TCGAACCGTACACTTCAAACATTTATACACGCCGTGTACTATCGGGTGAATTCAACATTG 261233 Query 97911 ACCAACGTGCACTTGGTTCGAGACTTGGAACGG-CTCAATCTGTGGAACGATGACATGGC 97969 | | | | || ||| || ||| ||| | || ||| | || ||| | || || ||| Sbjct 261234 TCAATCAT-CATTTGCTTAAAGATTTG-ACCGAACTCGACCTATGGGATGAGGAAATGAA 261291 Query 97970 CCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTT 98029 | || || | | | ||| ||||| |||||||| || || |||| | Sbjct 261292 AAATAAAATTATTTCTAGCCGTGGCTCCATACAAAACATCGAGGAAATTCCCAAAGAAAT 261351 Query 98030 GCGCAGAA-TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTG 98088 || ||| ||||||| || || ||||| ||| | |||||| || | ||||||| Sbjct 261352 ACG-AGAGCTCTACAAAACGGTATGGGAAATTTCTGTCAAGACCACCATTAAAATGGCTG 261410 Query 98089 CCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCA 98148 | || | || | | ||||||||| |||||||| |||||| | | || |||||||||| Sbjct 261411 CTGATCGTGGAGCTTTCATTGACCAAAGTCAATCCTTCAATATACATGTGGCCGAGCCCA 261470 Query 98149 CCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCA 98208 |||| | ||||||| ||||| || || | ||||| ||||| |||||||||| Sbjct 261471 ACTACGGCAAATTGACTTCAATACATTTCTATTCCTGGAAAGCTGGCCTTAAGACGGGCA 261530 Query 98209 TGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 |||| ||| ||||||| || | || ||||||| |||| ||| || || || Sbjct 261531 TGTATTATTTGAGAACTAAACCAGCTGCCAATGCTATACAATTCACTGTTGA 261582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 354/547 (65%), Gaps = 14/547 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 || || || | | ||| ||| | ||||| ||| | ||| | | |||| ||||| ||| Sbjct 260117 ACTAATGGAACCTCCAATGGTTTGGTGCCCATGTTAAGAGTATTCAAT--AATGTTGCAC 260174 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | |||||| ||||| || ||||| || || || | ||| ||||||||||||||| Sbjct 260175 GCTACGTTGATCAGGGTGGTGGCAAACGTCCTGGTGCATTTGCCATCTACTTGGAACCTT 260234 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| ||||| | ||||| ||| | || | || || | ||| |||||| | Sbjct 260235 GGCATTCGGACATCTTTGAGTTTTTGGATTTAAAAAAGAATACCGGCAAAGAAGAGCATC 260294 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | ||||| || | || ||||| || ||| | ||||||||||| ||| || || | | Sbjct 260295 GTGCCAGAGATCTTTTCTATGCTCTTTGGATACCAGATTTGTTTATGCGACGTGTGGAAG 260354 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| | ||| ||||||||| || || | || || || || ||||| Sbjct 260355 AAAACGGCGATTGGTCCCTAATGTGTCCTCACAAATGTCCAGGACTCCATGAGGTCTGGG 260414 Query 97105 GCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGC--CGATACGTGAG 97159 | ||||| ||||| |||| ||| ||||| | | ||| | || || Sbjct 260415 GTGAAGAATTTGA---CAAGCTTTACGAAAAATACGAAAAGGCCGGCAAAGCTAACAGA- 260470 Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 || | | | || | | || ||| ||||| | | || ||||| |||||||| Sbjct 260471 ACCA-TTAAGGCGCAGGCGCTTTGGTTTGCCATTATAGAATCCCAAGTAGAAACTGGAAC 260529 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 ||| ||||| || | ||||| | |||||||| || || |||| | | ||||| Sbjct 260530 TCCCTACATGCTATTTAAGGACTCTTGTAATCGCAAAAGTAATCAACAAAATGTTGGCAC 260589 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 ||| || || |||| ||||||| ||||| || || || | | ||||| || | || Sbjct 260590 CATTAAATGCAGCAATTTGTGCACAGAAATCGTTGAATATTCAGCACCGGATGAAATCGC 260649 Query 97340 AGTTTGC 97346 || ||| Sbjct 260650 TGTCTGC 260656 >seq305 Length=710094 Score = 143 bits (158), Expect = 4e-29 Identities = 476/731 (65%), Gaps = 32/731 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| |||| || |||||||| || || || || |||||||| || || ||| || | Sbjct 409082 AGGCTGAGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACT 409023 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 |||||| | | || || | ||| || | || || || || | ||||| ||||||| Sbjct 409022 GGGAGAAAC---TCACAGACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTG 408966 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACC 125216 | | ||||||||| || || || || ||||| || || | |||| ||||||||| || Sbjct 408965 CTGCCTCCGATGGCATAGTTAATGAGAATCTTGTCGAGA-GATTTTCTCAAGAGGTGCAA 408907 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 | | || | ||||| || || ||||| || || ||||| || ||||||||| Sbjct 408906 GTAACTGAAGCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAA 408847 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATC---CGCAACGTAAACACATGCTC 125333 |||||| | || ||||||| || ||| |||| |||||| || | | Sbjct 408846 ATGTACAGCATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAATA---TTTA 408790 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGG 125393 || || || || || || |||| || | | ||| ||| | |||| | ||| Sbjct 408789 TTCAATGCCATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGG 408730 Query 125394 ATCGATGA-CGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 || || | || | ||| | | | || | | | || || || || || || Sbjct 408729 AT--ATCATCG--GATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGA 408674 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||||| ||||| || |||||||| |||| || ||| | ||||| || || || || Sbjct 408673 AGGCATATTCTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAAT 408614 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 |||||| | || | |||||| | ||||| || ||||| || | || ||||| || Sbjct 408613 GCCCGGCTTAACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTT 408554 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA--TCCAGCGATGAAAAG 125627 ||| | | ||||| || |||||| ||||||| ||||| ||| Sbjct 408553 TGCTGTATTGATGTTT---AAGTATCTG--------GTGCAGAAGCCCAGCAGAGAACGT 408505 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 |||| | || ||| || || || | || ||||| || || || || ||| | | Sbjct 408504 ATCATTGAGATAATAAGAGAAGCGGTTAAAATCGAACAGGAATTCCTTACAGAAGCATTG 408445 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || || ||||||| ||||| || | |||||| |||||| || || ||||| ||| Sbjct 408444 CCATGCAATTTGATTGGTATGAATTGTGATTTAATGTCCGAGTATATTGAATTTGTAGCA 408385 Query 125748 GATCGTCTACT 125758 |||||||| || Sbjct 408384 GATCGTCTGCT 408374 >seq310 Length=676523 Score = 111 bits (122), Expect = 2e-19 Identities = 315/485 (65%), Gaps = 12/485 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || ||||| ||||||||||| | |||||||| || || ||| || Sbjct 124061 TTGCGGAAGAAGATAACACCGGCGCGAGGACCTCTCAACGTCTTGTGAGTGGTGGTGCTC 124120 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||| || |||||| || || ||||| | | || | ||| || |||| | Sbjct 124121 ACAACATCGGCATACTCGAACGGAGATGGAATCAAACCAGCTGCCACCAAACCAGCAACG 124180 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||| || | || |||| | |||||| | || ||||| || | Sbjct 124181 TGGGCCATATCAGCAAACAAATAGGAATCATTAGCATCGCACACCTTGCGGAAACGAGCA 124240 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| || || | ||| ||| || || || || | || || ||||| || Sbjct 124241 TAGTCCAGGCAACGTGAATAACAAGACACACCAGCAATAATAACTCTTGGCTTGAACAGT 124300 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 || ||| | | | | |||| |||| | || || | | ||||||||| || Sbjct 124301 TTAGCATTAGCCTCCAAACCCTCATAATCGATTAAGCCGGTTTTGGCATCCACCTTATAG 124360 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGG--ACACGTTGCG----------GAATCCG 127449 ||||| ||| ||||||| ||||| || | | ||||| | || || Sbjct 124361 GGCATAGATTCAAAAAAGATCGATGTGGCCGAAATACGTTTGGTAGGTGTCATAAAACCA 124420 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || |||| || || || ||||||| || | ||||| || | | | || || | | Sbjct 124421 TGAGTCAAATGTCCACCATCGGGCAAGTCCAAACCCATAATGCGATCATGGGGCTGCAGC 124480 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | |||||||| ||||||||||| ||| ||||| || || || |||||| || ||| Sbjct 124481 AGACCAGTGTAGACGGCAAAGTTAGCCGGTGAGCCTGAATAGGGCTGTACATTAACACCC 124540 Query 127570 CATTC 127574 ||||| Sbjct 124541 CATTC 124545 >seq340 Length=684216 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 134236 ATACGCTCACAAATCAGTTGTGCGATGCGATCACCCTTTGACACTACAAAGTCGTCATCG 134295 |||||||||||||| | || || ||||||||||| | ||| |||| || | ||| Sbjct 333768 ATACGCTCACAAATTAACTGAGCAATGCGATCACCACGTTTCACCTCAAACTCTTGGTCG 333709 Query 134296 GAATGGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCT 134355 || || ||||| || || || |||| |||||| | ||||| ||||||||| ||||| Sbjct 333708 GAGTGATTAAACAGCACAACGCCAAGGTTTCCTCTGTAGTCTTCGTCCACGACCCCGGCA 333649 Query 134356 CCGACGTCGAT 134366 || || || || Sbjct 333648 CCAACATCAAT 333638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740947652063920