Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq326 165 1e-35
seq1090 145 1e-29
seq305 143 4e-29
seq310 111 2e-19
seq340 84.2 3e-11
>seq326
Length=702362
Score = 165 bits (182), Expect = 1e-35
Identities = 414/624 (66%), Gaps = 4/624 (1%)
Strand=Plus/Plus
Query 70001 CACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGA 70060
||||| ||| |||||||| | || | |||||||| |||||| ||||| || ||
Sbjct 509701 CACATATGGGATGGCAACAGCACACGCGACTTTTTGGATAAGCTCGGTTTCACGGATCGA 509760
Query 70061 CAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTAT 70120
| || || ||| |||| || || || || || |||||| | || | || | |||||
Sbjct 509761 GAGGAAGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTGGAGCTAAGTAC 509820
Query 70121 GTAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTG 70178
| ||| | || | ||||| ||||||| || ||| | | ||| | |||
Sbjct 509821 CGAACTTGCCACGATA-ACTATGACAACGAGGGTGTGGACCAACTAAA-ACAGGTTATTC 509878
Query 70179 ACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAG 70238
| || | || ||||| || || | ||| | |||| | | |||||||| |
Sbjct 509879 ATACAATACGCACTAATCCCGATGACAGACGTATCATGATGTCCGCTTGGAATCCCATGG 509938
Query 70239 ATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATG 70298
| ||| || ||||| | || || ||||| || ||||| |||||||| | |||
Sbjct 509939 ACATGCCGCAGATGGCTTTGCCTCCCTGTCATTGCTTGGCCCAGTTTTATGTTGCCAATG 509998
Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358
| | | || || | | ||||| | ||||||||||||||| | || ||||| || |
Sbjct 509999 GTGAGCTATCTTGTCAATTATATCAACGCAGTGCCGACATGGGCTTAGGAGTACCATTCA 510058
Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418
||||||| ||| | ||||||| | |||||||| ||||| || ||||| || |
Sbjct 510059 ACATTGCCTCATATGCCTTGTTGACCTATATGATTGCCCACATAACTGGCCTAAAGCCTG 510118
Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478
|| || |||||||| | ||||| || || || ||| || ||| | || ||||| |
Sbjct 510119 GTGATTTTGTACACACATTGGGCGATGCCCATGTATATAAGAACCACGTTGAACCATTGA 510178
Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTG 70538
|| |||| | |||| | || |||||||||||||| || | |||||||| |
Sbjct 510179 GGGAGCAATTAAAACGCAAACCCAGACCTTTTCCCAAATTGATAATCAAACGTAAAGTAG 510238
Query 70539 AAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTA 70598
|| ||||||| ||||| | |||||||| ||| | |||| | ||||| || |
Sbjct 510239 AAGATATTGAGGACTTTAAATTTGAAGATTTCGAAATTGTCGATTACAAACCATATCCAA 510298
Query 70599 AGATTCCCATGGTTCTGGCTGTTT 70622
| |||| |||| |||||||||
Sbjct 510299 AAATTCAAATGGAAATGGCTGTTT 510322
>seq1090
Length=275775
Score = 145 bits (160), Expect = 1e-29
Identities = 320/472 (68%), Gaps = 6/472 (1%)
Strand=Plus/Plus
Query 97792 TGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTT 97851
|||| |||| || |||||||||||| | ||| ||||| | | ||||| |||| |||
Sbjct 261114 TGCTCCTGGCCCCCATGCCCACGGCTTCGACTGCCCAAATTATGGGCAACAATGAAGCTT 261173
Query 97852 TTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCA-ATTG 97910
| ||||||| ||| |||||||| || | || | || || || || | ||||
Sbjct 261174 TCGAACCGTACACTTCAAACATTTATACACGCCGTGTACTATCGGGTGAATTCAACATTG 261233
Query 97911 ACCAACGTGCACTTGGTTCGAGACTTGGAACGG-CTCAATCTGTGGAACGATGACATGGC 97969
| | | | || ||| || ||| ||| | || ||| | || ||| | || || |||
Sbjct 261234 TCAATCAT-CATTTGCTTAAAGATTTG-ACCGAACTCGACCTATGGGATGAGGAAATGAA 261291
Query 97970 CCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTT 98029
| || || | | | ||| ||||| |||||||| || || |||| |
Sbjct 261292 AAATAAAATTATTTCTAGCCGTGGCTCCATACAAAACATCGAGGAAATTCCCAAAGAAAT 261351
Query 98030 GCGCAGAA-TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTG 98088
|| ||| ||||||| || || ||||| ||| | |||||| || | |||||||
Sbjct 261352 ACG-AGAGCTCTACAAAACGGTATGGGAAATTTCTGTCAAGACCACCATTAAAATGGCTG 261410
Query 98089 CCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCA 98148
| || | || | | ||||||||| |||||||| |||||| | | || ||||||||||
Sbjct 261411 CTGATCGTGGAGCTTTCATTGACCAAAGTCAATCCTTCAATATACATGTGGCCGAGCCCA 261470
Query 98149 CCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCA 98208
|||| | ||||||| ||||| || || | ||||| ||||| ||||||||||
Sbjct 261471 ACTACGGCAAATTGACTTCAATACATTTCTATTCCTGGAAAGCTGGCCTTAAGACGGGCA 261530
Query 98209 TGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260
|||| ||| ||||||| || | || ||||||| |||| ||| || || ||
Sbjct 261531 TGTATTATTTGAGAACTAAACCAGCTGCCAATGCTATACAATTCACTGTTGA 261582
Score = 98.7 bits (108), Expect = 1e-15
Identities = 354/547 (65%), Gaps = 14/547 (3%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864
|| || || | | ||| ||| | ||||| ||| | ||| | | |||| ||||| |||
Sbjct 260117 ACTAATGGAACCTCCAATGGTTTGGTGCCCATGTTAAGAGTATTCAAT--AATGTTGCAC 260174
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
| |||||| ||||| || ||||| || || || | ||| |||||||||||||||
Sbjct 260175 GCTACGTTGATCAGGGTGGTGGCAAACGTCCTGGTGCATTTGCCATCTACTTGGAACCTT 260234
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
|||| ||||| | ||||| ||| | || | || || | ||| |||||| |
Sbjct 260235 GGCATTCGGACATCTTTGAGTTTTTGGATTTAAAAAAGAATACCGGCAAAGAAGAGCATC 260294
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044
| ||||| || | || ||||| || ||| | ||||||||||| ||| || || | |
Sbjct 260295 GTGCCAGAGATCTTTTCTATGCTCTTTGGATACCAGATTTGTTTATGCGACGTGTGGAAG 260354
Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104
| ||| | ||| ||||||||| || || | || || || || |||||
Sbjct 260355 AAAACGGCGATTGGTCCCTAATGTGTCCTCACAAATGTCCAGGACTCCATGAGGTCTGGG 260414
Query 97105 GCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGC--CGATACGTGAG 97159
| ||||| ||||| |||| ||| ||||| | | ||| | || ||
Sbjct 260415 GTGAAGAATTTGA---CAAGCTTTACGAAAAATACGAAAAGGCCGGCAAAGCTAACAGA- 260470
Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219
|| | | | || | | || ||| ||||| | | || ||||| ||||||||
Sbjct 260471 ACCA-TTAAGGCGCAGGCGCTTTGGTTTGCCATTATAGAATCCCAAGTAGAAACTGGAAC 260529
Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279
||| ||||| || | ||||| | |||||||| || || |||| | | |||||
Sbjct 260530 TCCCTACATGCTATTTAAGGACTCTTGTAATCGCAAAAGTAATCAACAAAATGTTGGCAC 260589
Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339
||| || || |||| ||||||| ||||| || || || | | ||||| || | ||
Sbjct 260590 CATTAAATGCAGCAATTTGTGCACAGAAATCGTTGAATATTCAGCACCGGATGAAATCGC 260649
Query 97340 AGTTTGC 97346
|| |||
Sbjct 260650 TGTCTGC 260656
>seq305
Length=710094
Score = 143 bits (158), Expect = 4e-29
Identities = 476/731 (65%), Gaps = 32/731 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
||||| |||| || |||||||| || || || || |||||||| || || ||| || |
Sbjct 409082 AGGCTGAGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACT 409023
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
|||||| | | || || | ||| || | || || || || | ||||| |||||||
Sbjct 409022 GGGAGAAAC---TCACAGACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTG 408966
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACC 125216
| | ||||||||| || || || || ||||| || || | |||| ||||||||| ||
Sbjct 408965 CTGCCTCCGATGGCATAGTTAATGAGAATCTTGTCGAGA-GATTTTCTCAAGAGGTGCAA 408907
Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276
| | || | ||||| || || ||||| || || ||||| || |||||||||
Sbjct 408906 GTAACTGAAGCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAA 408847
Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATC---CGCAACGTAAACACATGCTC 125333
|||||| | || ||||||| || ||| |||| |||||| || | |
Sbjct 408846 ATGTACAGCATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAATA---TTTA 408790
Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGG 125393
|| || || || || || |||| || | | ||| ||| | |||| | |||
Sbjct 408789 TTCAATGCCATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGG 408730
Query 125394 ATCGATGA-CGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449
|| || | || | ||| | | | || | | | || || || || || ||
Sbjct 408729 AT--ATCATCG--GATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGA 408674
Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509
||||| ||||| || |||||||| |||| || ||| | ||||| || || || ||
Sbjct 408673 AGGCATATTCTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAAT 408614
Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569
|||||| | || | |||||| | ||||| || ||||| || | || ||||| ||
Sbjct 408613 GCCCGGCTTAACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTT 408554
Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA--TCCAGCGATGAAAAG 125627
||| | | ||||| || |||||| ||||||| ||||| |||
Sbjct 408553 TGCTGTATTGATGTTT---AAGTATCTG--------GTGCAGAAGCCCAGCAGAGAACGT 408505
Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687
|||| | || ||| || || || | || ||||| || || || || ||| | |
Sbjct 408504 ATCATTGAGATAATAAGAGAAGCGGTTAAAATCGAACAGGAATTCCTTACAGAAGCATTG 408445
Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747
|| || ||||||| ||||| || | |||||| |||||| || || ||||| |||
Sbjct 408444 CCATGCAATTTGATTGGTATGAATTGTGATTTAATGTCCGAGTATATTGAATTTGTAGCA 408385
Query 125748 GATCGTCTACT 125758
|||||||| ||
Sbjct 408384 GATCGTCTGCT 408374
>seq310
Length=676523
Score = 111 bits (122), Expect = 2e-19
Identities = 315/485 (65%), Gaps = 12/485 (2%)
Strand=Plus/Plus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | ||||| || ||||| ||||||||||| | |||||||| || || ||| ||
Sbjct 124061 TTGCGGAAGAAGATAACACCGGCGCGAGGACCTCTCAACGTCTTGTGAGTGGTGGTGCTC 124120
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|||| || |||||| || || ||||| | | || | ||| || |||| |
Sbjct 124121 ACAACATCGGCATACTCGAACGGAGATGGAATCAAACCAGCTGCCACCAAACCAGCAACG 124180
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
|| || ||||| || | || |||| | |||||| | || ||||| || |
Sbjct 124181 TGGGCCATATCAGCAAACAAATAGGAATCATTAGCATCGCACACCTTGCGGAAACGAGCA 124240
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
||||||| || || | ||| ||| || || || || | || || ||||| ||
Sbjct 124241 TAGTCCAGGCAACGTGAATAACAAGACACACCAGCAATAATAACTCTTGGCTTGAACAGT 124300
Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401
|| ||| | | | | |||| |||| | || || | | ||||||||| ||
Sbjct 124301 TTAGCATTAGCCTCCAAACCCTCATAATCGATTAAGCCGGTTTTGGCATCCACCTTATAG 124360
Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGG--ACACGTTGCG----------GAATCCG 127449
||||| ||| ||||||| ||||| || | | ||||| | || ||
Sbjct 124361 GGCATAGATTCAAAAAAGATCGATGTGGCCGAAATACGTTTGGTAGGTGTCATAAAACCA 124420
Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509
|| |||| || || || ||||||| || | ||||| || | | | || || | |
Sbjct 124421 TGAGTCAAATGTCCACCATCGGGCAAGTCCAAACCCATAATGCGATCATGGGGCTGCAGC 124480
Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569
| |||||||| ||||||||||| ||| ||||| || || || |||||| || |||
Sbjct 124481 AGACCAGTGTAGACGGCAAAGTTAGCCGGTGAGCCTGAATAGGGCTGTACATTAACACCC 124540
Query 127570 CATTC 127574
|||||
Sbjct 124541 CATTC 124545
>seq340
Length=684216
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 134236 ATACGCTCACAAATCAGTTGTGCGATGCGATCACCCTTTGACACTACAAAGTCGTCATCG 134295
|||||||||||||| | || || ||||||||||| | ||| |||| || | |||
Sbjct 333768 ATACGCTCACAAATTAACTGAGCAATGCGATCACCACGTTTCACCTCAAACTCTTGGTCG 333709
Query 134296 GAATGGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCT 134355
|| || ||||| || || || |||| |||||| | ||||| ||||||||| |||||
Sbjct 333708 GAGTGATTAAACAGCACAACGCCAAGGTTTCCTCTGTAGTCTTCGTCCACGACCCCGGCA 333649
Query 134356 CCGACGTCGAT 134366
|| || || ||
Sbjct 333648 CCAACATCAAT 333638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740947652063920
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