Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq404 143 2e-29
seq1431 141 7e-29
seq1094 122 6e-23
>seq404
Length=684826
Score = 143 bits (158), Expect = 2e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||| | || || |||||||| || |||||||| | ||| | |||||
Sbjct 506559 AATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCT 506500
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| | || ||||||||| | ||||| || |||||||| ||| ||||||||||||||
Sbjct 506499 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 506440
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
||||||| || ||| |||| |||||||| | || || || ||||| ||||||
Sbjct 506439 TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTT 506380
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| |||| ||||||||||| ||||||||
Sbjct 506379 TTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 129 bits (142), Expect = 4e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|||||||| ||||| || ||||| || |||||||| || | | | | | |||||
Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| ||||| ||| | || || ||||||||||| ||||| |||||||| || |
Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGA 509099
Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||| ||| || ||| |||| || |||||| ||| || ||||| || ||||||||
Sbjct 509098 ATTTTAGCT-TTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTT 509040
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||||| || || || || ||||||||
Sbjct 509039 TCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 118 bits (130), Expect = 8e-22
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212
|| ||||| || || || |||||||| ||||| || ||| | ||| || ||||||
Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGG--ACAATGTACGTCCGTCTT 506727
Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272
| ||||| ||||||||| | |||||||| ||||| || ||||| |||||||||||
Sbjct 506726 CCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTT 506667
Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||||||| ||| ||| ||||||| ||||| | ||| || || | || || ||||
Sbjct 506666 GAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTT 506607
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || || | || || || || ||||||||
Sbjct 506606 TTCCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 111 bits (122), Expect = 1e-19
Identities = 155/213 (73%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212
|| || || ||||| || ||||| || || || ||||| | | ||| || | ||||
Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATC--TGACAATGTACGACCATCTT 508933
Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272
| || ||||| |||||| | ||||||||||| || || ||||| ||||| |||||
Sbjct 508932 CCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTT 508873
Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
||| || ||| || || |||| ||||||||| ||| || ||||| || ||||||
Sbjct 508872 GAATCTTAGCT-TTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTT 508814
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| || || || || |||||||||
Sbjct 508813 TTTCCAGTCAGGGTCTTGACGAAGATTTGCATA 508781
Score = 111 bits (122), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212
|| ||||| || || || || || || |||||||| || | ||| || | ||||
Sbjct 509446 ACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCG--ACAATGTGCGACCATCTT 509389
Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272
| || |||||||| || | ||||||||||| || || ||||| |||||||| ||
Sbjct 509388 CCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTT 509329
Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||||||| ||| ||| ||||||||||||| ||| || || || ||||| || |
Sbjct 509328 GAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCT 509269
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || |||| ||| || || ||||||||||||
Sbjct 509268 TTCCAGTCAAAGTCTTGACGAAAATTTGCATA 509237
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
||||||||||| ||||| || || || || |||||||| ||| || | | | |||
Sbjct 507015 AAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCT 506956
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| || || ||||| ||| | |||||||| |||||||| ||||| ||||| |||||
Sbjct 506955 TCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 506896
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
||| ||| || || |||| ||||| || | || || || | ||| ||||||
Sbjct 506895 TGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTT 506836
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||| || || || || |||||||||
Sbjct 506835 TTGCCAGTCAAGGTCTTGACGAAGATTTGCATA 506803
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||| || || || ||||| || || |||||| | | | | |||||
Sbjct 506329 AACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTC 506270
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| ||||| || || | |||||||||||||| || ||||| |||||||| ||
Sbjct 506269 CAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTG 506210
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| ||| || ||| |||| |||||||| ||| || || || || ||||| ||
Sbjct 506209 AATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTT 506150
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| || | || || || || || ||||||||
Sbjct 506149 GCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117
>seq1431
Length=173026
Score = 141 bits (156), Expect = 7e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
|||||| | ||||| |||||||||||||| || || || |||||||||||||| ||
Sbjct 151321 GCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGA 151262
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
|| | | | ||||| | ||||| || || |||| ||||||||||| || |||
Sbjct 151261 TAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGG 151202
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||| |||||||| ||| ||| ||||||| ||||||| ||||| || ||
Sbjct 151201 AATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAAC 151142
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | |||||||| || || || | |||||| |||||||| ||||| ||
Sbjct 151141 TTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091
>seq1094
Length=241507
Score = 122 bits (134), Expect = 6e-23
Identities = 157/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212
|| ||||| | || || || ||||| |||||||| || | | || || | || |
Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTC--TGACAAGGTGCGACCATCCT 166130
Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272
| |||||||||||||| | |||||||||||||| || ||| || |||||||||||
Sbjct 166131 CCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTT 166190
Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||||| ||| ||| |||| || || ||| | ||||| || |||||||||||||
Sbjct 166191 GGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTT 166250
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367
|||| || || || || ||||| || ||||| |||
Sbjct 166251 TACCGGTTAGGGTCTTGACAAAGATCTGCATTTTT 166285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362126045901522
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