Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq404 143 2e-29 seq1431 141 7e-29 seq1094 122 6e-23 >seq404 Length=684826 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || |||||||| || |||||||| | ||| | ||||| Sbjct 506559 AATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCT 506500 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||||||| | ||||| || |||||||| ||| |||||||||||||| Sbjct 506499 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 506440 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| || ||| |||| |||||||| | || || || ||||| |||||| Sbjct 506439 TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTT 506380 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| ||||||||||| |||||||| Sbjct 506379 TTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| ||||| || ||||| || |||||||| || | | | | | ||||| Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||| ||| | || || ||||||||||| ||||| |||||||| || | Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGA 509099 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || |||||| ||| || ||||| || |||||||| Sbjct 509098 ATTTTAGCT-TTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTT 509040 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || || || |||||||| Sbjct 509039 TCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 118 bits (130), Expect = 8e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || ||||| || || || |||||||| ||||| || ||| | ||| || |||||| Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGG--ACAATGTACGTCCGTCTT 506727 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | ||||| ||||||||| | |||||||| ||||| || ||||| ||||||||||| Sbjct 506726 CCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTT 506667 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||||| ||| ||| ||||||| ||||| | ||| || || | || || |||| Sbjct 506666 GAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTT 506607 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || | || || || || |||||||| Sbjct 506606 TTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 111 bits (122), Expect = 1e-19 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || || || ||||| || ||||| || || || ||||| | | ||| || | |||| Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATC--TGACAATGTACGACCATCTT 508933 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | || ||||| |||||| | ||||||||||| || || ||||| ||||| ||||| Sbjct 508932 CCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTT 508873 Query 15273 AAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| || || |||| ||||||||| ||| || ||||| || |||||| Sbjct 508872 GAATCTTAGCT-TTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTT 508814 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || || || ||||||||| Sbjct 508813 TTTCCAGTCAGGGTCTTGACGAAGATTTGCATA 508781 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || ||||| || || || || || || |||||||| || | ||| || | |||| Sbjct 509446 ACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCG--ACAATGTGCGACCATCTT 509389 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | || |||||||| || | ||||||||||| || || ||||| |||||||| || Sbjct 509388 CCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTT 509329 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||||| ||| ||| ||||||||||||| ||| || || || ||||| || | Sbjct 509328 GAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCT 509269 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || |||| ||| || || |||||||||||| Sbjct 509268 TTCCAGTCAAAGTCTTGACGAAAATTTGCATA 509237 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||||||||| ||||| || || || || |||||||| ||| || | | | ||| Sbjct 507015 AAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCT 506956 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| ||| | |||||||| |||||||| ||||| ||||| ||||| Sbjct 506955 TCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 506896 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| || || |||| ||||| || | || || || | ||| |||||| Sbjct 506895 TGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTT 506836 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || || || ||||||||| Sbjct 506835 TTGCCAGTCAAGGTCTTGACGAAGATTTGCATA 506803 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || ||||| || || |||||| | | | | ||||| Sbjct 506329 AACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTC 506270 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || || | |||||||||||||| || ||||| |||||||| || Sbjct 506269 CAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTG 506210 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| || ||| |||| |||||||| ||| || || || || ||||| || Sbjct 506209 AATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTT 506150 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || | || || || || || |||||||| Sbjct 506149 GCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117 >seq1431 Length=173026 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | ||||| |||||||||||||| || || || |||||||||||||| || Sbjct 151321 GCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGA 151262 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||| | ||||| || || |||| ||||||||||| || ||| Sbjct 151261 TAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGG 151202 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||| |||||||| ||| ||| ||||||| ||||||| ||||| || || Sbjct 151201 AATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAAC 151142 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | |||||||| || || || | |||||| |||||||| ||||| || Sbjct 151141 TTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 >seq1094 Length=241507 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || ||||| | || || || ||||| |||||||| || | | || || | || | Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTC--TGACAAGGTGCGACCATCCT 166130 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | |||||||||||||| | |||||||||||||| || ||| || ||||||||||| Sbjct 166131 CCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTT 166190 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| ||| |||| || || ||| | ||||| || ||||||||||||| Sbjct 166191 GGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTT 166250 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 |||| || || || || ||||| || ||||| ||| Sbjct 166251 TACCGGTTAGGGTCTTGACAAAGATCTGCATTTTT 166285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362126045901522