Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq404 104 2e-17
seq1094 86.0 5e-12
>seq404
Length=684826
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
|| |||| ||||| ||||| || ||||||||||||||||| | || |||| ||||
Sbjct 506559 AATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCT 506500
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|| ||||| || || || |||| | || ||| || || || | || ||||||||
Sbjct 506499 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 506440
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
|||||| ||| || | | | ||||| |||||| || | ||| ||||||
Sbjct 506439 TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTT 506380
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| || || ||||| ||||| ||||||||
Sbjct 506379 TTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
>seq1094
Length=241507
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||||| || |||||||||||||| ||||| || | || || | ||||||
Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTCC 166132
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
| ||||| || ||| | || | | || ||||| || | || ||||||||
Sbjct 166133 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 166192
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
||||| || || | | | ||| ||| |||||| || | |||||||||||||
Sbjct 166193 ATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTA 166252
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044
|| |||| || |||||||| || ||||||||
Sbjct 166253 CCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414511956518548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |