Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq404 105 4e-18 seq1094 98.7 6e-16 >seq404 Length=684826 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||||||||| || |||||||| ||||||||||||||||| | | | Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCG 506503 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||| ||| || || || || || ||||| | || || |||||||| Sbjct 506502 TCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTG 506443 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || || | ||| |||| || || Sbjct 506442 TCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATG 506383 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || | |||||||| || ||||||||| Sbjct 506382 GTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 Score = 102 bits (112), Expect = 5e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||| || |||||||| || || || || ||||| | || ||| ||| Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCC 506725 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| || || ||||| || || || | ||| || |||||||| || | Sbjct 506724 AATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGA 506665 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || || || |||| ||| ||||| || || ||| Sbjct 506664 ATTTTGGCC---TTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTT 506608 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| | || || ||||| ||||||||| Sbjct 506607 TTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || ||||| | || || ||||| || || ||||| || |||||| || | || ||| Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| || || ||||| ||||| ||||| | ||| ||||||||||| || | Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGA 509099 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| || || ||| |||| || || | || || |||||| Sbjct 509098 ATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTT 509039 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || ||||| ||||||||| Sbjct 509038 CCTGTCAGGGTCTTGACGAAGATTTGCATG 509009 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | ||||| ||||| || ||||| ||||| ||||| | | || ||| Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCTTCC 508931 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 || || || ||| || || ||||||||||| || | ||| || ||||| || || | Sbjct 508930 AACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 508871 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| ||| || ||| |||| || || | ||| || |||||| Sbjct 508870 ATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTTT 508811 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| |||||||| Sbjct 508810 CCAGTCAGGGTCTTGACGAAGATTTGCAT 508782 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | ||| || || || || || ||||| || ||||| || | || || Sbjct 509447 CACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTC 509388 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| || || || ||| || ||||||||||| || | ||| ||||||||||| || Sbjct 509387 CAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTG 509328 Query 33280 AA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 || | ||| || || ||| || || || ||||| || |||| || || || Sbjct 509327 AATTTTGGCC---TTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGT 509271 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||| || |||||||||||||| Sbjct 509270 CTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||| || || ||||| ||||| ||||| ||||| | || || ||| Sbjct 506328 ACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCC 506269 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | || || || ||| || |||||||| || || | || ||||||||||| || | Sbjct 506268 AGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 506209 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| ||| || || ||||| ||| |||| || || || || Sbjct 506208 ATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTG 506149 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || | || || ||||| || ||||| || Sbjct 506148 CCAGTTAATGTCTTCACGAAGATCTGCATATT 506117 >seq1094 Length=241507 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| |||||||| ||||| || ||||| || ||||| || | || ||| Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTCC 166132 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| || ||| ||| || |||||||| || || | || || |||||||| || | Sbjct 166133 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 166192 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | || |||| || || ||| Sbjct 166193 ATTTTAGCC---TTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTT 166249 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || || || || || || || || ||||| ||| Sbjct 166250 TTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTT 166285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318730815601716