Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq404 105 4e-18
seq1094 98.7 6e-16
>seq404
Length=684826
Score = 105 bits (116), Expect = 4e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| |||||||||||||| || |||||||| ||||||||||||||||| | | |
Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCG 506503
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| || | ||||| ||| || || || || || ||||| | || || ||||||||
Sbjct 506502 TCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTG 506443
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| ||| ||| || ||| ||| || || || | ||| |||| || ||
Sbjct 506442 TCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATG 506383
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
||||| || || | |||||||| || |||||||||
Sbjct 506382 GTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
Score = 102 bits (112), Expect = 5e-17
Identities = 151/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||||||| | ||| || |||||||| || || || || ||||| | || ||| |||
Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCC 506725
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
|||||||| ||| || || ||||| || || || | ||| || |||||||| || |
Sbjct 506724 AATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGA 506665
Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| | ||| || || ||| || || || |||| ||| ||||| || || |||
Sbjct 506664 ATTTTGGCC---TTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTT 506608
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|||||||| | || || ||||| |||||||||
Sbjct 506607 TTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|| ||||| | || || ||||| || || ||||| || |||||| || | || |||
Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
|||||||| || || ||||| ||||| ||||| | ||| ||||||||||| || |
Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGA 509099
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
|| ||| || ||| || || ||| |||| || || | || || ||||||
Sbjct 509098 ATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTT 509039
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || || || || ||||| |||||||||
Sbjct 509038 CCTGTCAGGGTCTTGACGAAGATTTGCATG 509009
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | ||||| ||||| || ||||| ||||| ||||| | | || |||
Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCTTCC 508931
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
|| || || ||| || || ||||||||||| || | ||| || ||||| || || |
Sbjct 508930 AACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 508871
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || ||| ||| || ||| |||| || || | ||| || ||||||
Sbjct 508870 ATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTTT 508811
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || ||||| ||||||||
Sbjct 508810 CCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
||||||||| | ||| || || || || || ||||| || ||||| || | || ||
Sbjct 509447 CACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTC 509388
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279
||| || || || ||| || ||||||||||| || | ||| ||||||||||| ||
Sbjct 509387 CAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTG 509328
Query 33280 AA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
|| | ||| || || ||| || || || ||||| || |||| || || ||
Sbjct 509327 AATTTTGGCC---TTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGT 509271
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || | ||| || ||||||||||||||
Sbjct 509270 CTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||||||| | ||| || || ||||| ||||| ||||| ||||| | || || |||
Sbjct 506328 ACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCC 506269
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| || || || ||| || |||||||| || || | || ||||||||||| || |
Sbjct 506268 AGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 506209
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || ||| ||| || || ||||| ||| |||| || || || ||
Sbjct 506208 ATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTG 506149
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || | || || ||||| || ||||| ||
Sbjct 506148 CCAGTTAATGTCTTCACGAAGATCTGCATATT 506117
>seq1094
Length=241507
Score = 98.7 bits (108), Expect = 6e-16
Identities = 152/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||||||||| |||||||| ||||| || ||||| || ||||| || | || |||
Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTCC 166132
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277
||||| || ||| ||| || |||||||| || || | || || |||||||| || |
Sbjct 166133 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 166192
Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| | ||| || || ||| ||| |||||| || | || |||| || || |||
Sbjct 166193 ATTTTAGCC---TTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTT 166249
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|| || || || || || || || || ||||| |||
Sbjct 166250 TTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTT 166285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318730815601716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |