Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq404 102 7e-17
seq1094 91.5 1e-13
>seq404
Length=684826
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||||||||||||||||||||| ||||| || ||| || || ||||||
Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCC 506725
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
||||| ||||| || |||| | | ||||||||| ||| | ||||||||||| |
Sbjct 506724 AATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGA 506665
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
||||| || || | | | || ||| |||||| ||||| || || |||||
Sbjct 506664 ATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTT 506605
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || || || || || || ||||||||
Sbjct 506604 CCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|| ||||| || ||||||||||| || |||||||| || || ||| | |||||||
Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159
Query 20060 AATTGTTTGCCCGC-ATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
||||| ||||| || | | ||||| | ||||| || ||| | ||||||||| ||
Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGT-TGTTGGTCTGGGGGAATGCCTTCTTTATCTTG 509100
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
|||||| |||||| | | | || |||| ||||| ||| | || ||||||||
Sbjct 509099 AATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTT 509040
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| |||| || ||||| || ||||||||
Sbjct 509039 TCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
||| |||||||| | ||||||||||||||| || |||||||| || ||| ||
Sbjct 506560 CAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTC 506501
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115
||| | || ||||| || |||| | | |||||| || || | |||||||||||
Sbjct 506500 TTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTC 506441
Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175
|||||| ||| || | ||| | ||| ||| || |||| ||| |||||
Sbjct 506440 TTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGT 506381
Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| || ||||| ||||| ||||| ||||||||
Sbjct 506380 TTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| ||||| ||||| || || |||||||| || || || | ||||||
Sbjct 509447 CACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTC 509388
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
||| |||||||| ||| | || | | || ||||| ||| | ||||||||| ||
Sbjct 509387 CAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTG 509328
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
|||||| || || | | | | ||| |||||| ||||| ||||| || ||
Sbjct 509327 AATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCTT 509268
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| ||||| || ||||| |||||||||||
Sbjct 509267 TCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
||| || ||||| || ||||| || || || |||||||| ||| || || | |||
Sbjct 507016 CAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATC 506957
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115
|||||| || ||||| || |||| | | |||||| || ||| | |||||| |||||
Sbjct 506956 TTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 506897
Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175
||| || |||||| | | | | || ||| || ||| | ||| |||||
Sbjct 506896 TTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGT 506837
Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|||||| ||||| || ||||| || ||||||||
Sbjct 506836 TTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
>seq1094
Length=241507
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||| | || || || ||||| |||||||| || || || | ||| |||
Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTCC 166132
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
||||||||||| ||| | || | | |||||||| || | |||||||||||
Sbjct 166133 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 166192
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
||||| || || | ||| || ||| ||| || |||| ||||||||||||
Sbjct 166193 ATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTA 166252
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212
||||| | || |||||||| || |||||||||
Sbjct 166253 CCGGTTAGGGTCTTGACAAAGATCTGCATTTTT 166285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419525620595802
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |