Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq305 232 6e-56 >seq305 Length=710094 Score = 232 bits (256), Expect = 6e-56 Identities = 492/723 (68%), Gaps = 10/723 (1%) Strand=Plus/Plus Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027 ||||| | || || | || || ||||| || || |||| |||||||||||| ||| Sbjct 408365 AATTCGACTAGCAGACGATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTC 408424 Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087 || || || || || |||| |||||||| | || | | ||| || | ||| ||| Sbjct 408425 ATACCAATCAAATTGCATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCT 408484 Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--AGATGCTTAAACA 13145 || | | ||| || | || ||||||||| ||| | | || |||| |||||||| Sbjct 408485 TCTCTTATTATCTCAATGAT-ACGTTCTCTGCTGG-GCTTCTGCACCAGATACTTAAACA 408542 Query 13146 TC-ATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAAT 13204 || ||||| ||||||||||| ||||| ||||| || | ||| |||||||| || ||| Sbjct 408543 TCAATACA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAAT 408601 Query 13205 GTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaa 13264 |||| || ||||| || || ||||| || | ||| || || | ||||| || Sbjct 408602 GTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTG 408661 Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA 13324 || ||||| |||||||| || ||||| ||||| | | ||||||| | || | | Sbjct 408662 AAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCC 408721 Query 13325 CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTAT 13383 |||||| ||||| | |||||| |||||| || | |||| |||| || Sbjct 408722 GATGATATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTG-GCATAGTTTCAAT 408780 Query 13384 TGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443 || || |||||||| | || | || ||| |||||| || || || | | ||| Sbjct 408781 GGCATTGAATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCT 408840 Query 13444 ATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC 13503 |||||||| || |||| ||| ||||| || || ||||| ||||| || || | || || Sbjct 408841 GTACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTC 408900 Query 13504 TGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCAC 13562 | ||| || || || ||| ||||||| || | | || || |||||||| || || Sbjct 408901 AGTTACTTGCACCTCTTGAG-AAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGG 408959 Query 13563 TAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTA 13622 |||||||| ||||| | | || ||| || | | |||| || |||| | || Sbjct 408960 AGGCAGCAAAGAAAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCT 409019 Query 13623 ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAG 13682 ||| || | | |||||| || | ||| || |||||||| |||||||| || || ||| Sbjct 409020 CCCAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAG 409079 Query 13683 CCT 13685 ||| Sbjct 409080 CCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430919148214884