Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq305 232 6e-56
>seq305
Length=710094
Score = 232 bits (256), Expect = 6e-56
Identities = 492/723 (68%), Gaps = 10/723 (1%)
Strand=Plus/Plus
Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027
||||| | || || | || || ||||| || || |||| |||||||||||| |||
Sbjct 408365 AATTCGACTAGCAGACGATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTC 408424
Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087
|| || || || || |||| |||||||| | || | | ||| || | ||| |||
Sbjct 408425 ATACCAATCAAATTGCATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCT 408484
Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--AGATGCTTAAACA 13145
|| | | ||| || | || ||||||||| ||| | | || |||| ||||||||
Sbjct 408485 TCTCTTATTATCTCAATGAT-ACGTTCTCTGCTGG-GCTTCTGCACCAGATACTTAAACA 408542
Query 13146 TC-ATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAAT 13204
|| ||||| ||||||||||| ||||| ||||| || | ||| |||||||| || |||
Sbjct 408543 TCAATACA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAAT 408601
Query 13205 GTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaa 13264
|||| || ||||| || || ||||| || | ||| || || | ||||| ||
Sbjct 408602 GTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTG 408661
Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA 13324
|| ||||| |||||||| || ||||| ||||| | | ||||||| | || | |
Sbjct 408662 AAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCC 408721
Query 13325 CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTAT 13383
|||||| ||||| | |||||| |||||| || | |||| |||| ||
Sbjct 408722 GATGATATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTG-GCATAGTTTCAAT 408780
Query 13384 TGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443
|| || |||||||| | || | || ||| |||||| || || || | | |||
Sbjct 408781 GGCATTGAATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCT 408840
Query 13444 ATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC 13503
|||||||| || |||| ||| ||||| || || ||||| ||||| || || | || ||
Sbjct 408841 GTACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTC 408900
Query 13504 TGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCAC 13562
| ||| || || || ||| ||||||| || | | || || |||||||| || ||
Sbjct 408901 AGTTACTTGCACCTCTTGAG-AAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGG 408959
Query 13563 TAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTA 13622
|||||||| ||||| | | || ||| || | | |||| || |||| | ||
Sbjct 408960 AGGCAGCAAAGAAAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCT 409019
Query 13623 ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAG 13682
||| || | | |||||| || | ||| || |||||||| |||||||| || || |||
Sbjct 409020 CCCAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAG 409079
Query 13683 CCT 13685
|||
Sbjct 409080 CCT 409082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430919148214884
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |