Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq305 188 2e-42 seq404 172 1e-37 seq1431 158 3e-33 seq1094 136 9e-27 >seq305 Length=710094 Score = 188 bits (208), Expect = 2e-42 Identities = 368/538 (68%), Gaps = 13/538 (2%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || || ||||||||||| || ||||| ||||||||| | || | || | Sbjct 409082 AGGCTGAGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACT 409023 Query 268812 GGAA-AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 || | ||| | | | || | |||||| || || || || | | || || ||||| Sbjct 409022 GGGAGAAACTCACAGACA-ATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCT 408964 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | ||||| || ||||| || ||||| || |||| || | ||||||||| || | Sbjct 408963 GCCTCCGATGGCATAGTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTA 408904 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 |||||||| | || || || || |||||||| ||||| || ||| |||| || || ||| Sbjct 408903 ACTGAAGCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATG 408844 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGAT----AACAACGAAAAGAAAAGACTATT 269046 ||||| | | || || || ||||| | ||| | ||||| || | |||| Sbjct 408843 TACAGCATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAATATT----TATT 408788 Query 269047 TTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT 269106 | | || ||||||| ||| | || |||| |||| |||||| || |||||| Sbjct 408787 CAATGCCATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGAT 408728 Query 269107 A--AACG-ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTAT 269163 | | || || || || || ||| | || | |||||||| ||||| ||||| || Sbjct 408727 ATCATCGGATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCAT 408668 Query 269164 ATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGG 269223 |||||| || ||||||| | || || |||||||||||| | ||||| ||||| || Sbjct 408667 ATTCTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGG 408608 Query 269224 ATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281 ||||| ||||| ||||| ||||| | ||||||||||| || || || || ||| Sbjct 408607 CTTAACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCT 408550 >seq404 Length=684826 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| |||||||||||||| |||||||| || ||||| | |||| |||||||| Sbjct 506557 TACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTC 506498 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || ||||| ||||| | | |||||| || || || ||||||||||| || || Sbjct 506497 AAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG 506438 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | |||||| ||| || ||||| | || || || || Sbjct 506437 AATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTT 506378 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| | |||||||||||| || ||||| Sbjct 506377 ACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || | ||| | ||||||||| || || |||||||| || Sbjct 506349 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCG 506290 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || ||||| || ||||| || | | |||||||| ||| Sbjct 506289 GACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGA 506230 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| |||||||| ||||| |||||||| | |||||| ||||| Sbjct 506229 GGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCA 506170 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| | ||| || ||||| ||||| | ||| || || || |||||||| ||| Sbjct 506169 ACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATTG 506116 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || | ||||| |||||||||||| ||||| |||||||| Sbjct 506805 ATACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCG 506746 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| | ||| || ||||| ||||| | | ||||||||| || Sbjct 506745 GACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGG 506686 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || ||||| || || || |||||||||| ||||| |||||| Sbjct 506685 GGAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCA 506626 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| || || || | ||| || || ||||| ||||| Sbjct 506625 ACTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| |||| ||| | |||||||||||||| || || ||||| Sbjct 509239 ATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCT 509180 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | ||| ||||| | ||| || || || || |||| | ||||| || || Sbjct 509179 GACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGG 509120 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| || ||||| |||||||| | |||||| ||||| Sbjct 509119 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCG 509060 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||| || || || || || || || || || || || ||||| Sbjct 509059 ACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||| ||||| ||||| || || ||||| || | || | ||| || Sbjct 509450 AAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATC 509391 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||||| || ||||| || | | || ||||| || || || ||||||||||| Sbjct 509390 TTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATC 509331 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| || || || |||||||||| |||||| ||||| || || | ||||| || Sbjct 509330 TTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGT 509271 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || || || || ||||| Sbjct 509270 CTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| |||||||| || || | || | ||| ||||| | ||||| ||| Sbjct 508978 GTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCTTCCAACTGTTTACCA 508919 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || ||||| || || || ||||| || || |||||||| ||||| Sbjct 508918 GCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 508859 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||||| ||||| || |||| || || || || ||||| || || Sbjct 508858 ACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTTTCCAGTCAGGGTC 508799 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 508798 TTGACGAAGATTTGCAT 508782 >seq1431 Length=173026 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | || ||||| || || || || ||||| |||| || | ||| ||||| Sbjct 151302 ACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCATCTTCA 151243 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || |||||||| ||||| |||| | ||||||||||| || ||||| ||||| |||||| Sbjct 151242 AGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTGTCCTGA 151183 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || || || || ||||| ||||| Sbjct 151182 ATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATGGTCTTG 151123 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | ||||| ||||| |||||||| || Sbjct 151122 CCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 >seq1094 Length=241507 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| || || || || || ||||| || ||||| || | || | ||| || Sbjct 166070 AGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCC 166129 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| |||||||| || | | |||||||| || || || |||||||| || Sbjct 166130 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 166189 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || |||||||| | || ||| ||| |||||||| | ||||| || Sbjct 166190 TGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTT 166249 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || || ||||| ||||||||||| Sbjct 166250 TTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151220752899736