Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq305 188 2e-42
seq404 172 1e-37
seq1431 158 3e-33
seq1094 136 9e-27
>seq305
Length=710094
Score = 188 bits (208), Expect = 2e-42
Identities = 368/538 (68%), Gaps = 13/538 (2%)
Strand=Plus/Minus
Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811
|||| | || || ||||||||||| || ||||| ||||||||| | || | || |
Sbjct 409082 AGGCTGAGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACT 409023
Query 268812 GGAA-AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870
|| | ||| | | | || | |||||| || || || || | | || || |||||
Sbjct 409022 GGGAGAAACTCACAGACA-ATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCT 408964
Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930
| ||||| || ||||| || ||||| || |||| || | ||||||||| || |
Sbjct 408963 GCCTCCGATGGCATAGTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTA 408904
Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990
|||||||| | || || || || |||||||| ||||| || ||| |||| || || |||
Sbjct 408903 ACTGAAGCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATG 408844
Query 268991 TACAGTCTATTAATAGATACTTATATAGATGAT----AACAACGAAAAGAAAAGACTATT 269046
||||| | | || || || ||||| | ||| | ||||| || | ||||
Sbjct 408843 TACAGCATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAATATT----TATT 408788
Query 269047 TTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT 269106
| | || ||||||| ||| | || |||| |||| |||||| || ||||||
Sbjct 408787 CAATGCCATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGAT 408728
Query 269107 A--AACG-ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTAT 269163
| | || || || || || ||| | || | |||||||| ||||| ||||| ||
Sbjct 408727 ATCATCGGATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCAT 408668
Query 269164 ATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGG 269223
|||||| || ||||||| | || || |||||||||||| | ||||| ||||| ||
Sbjct 408667 ATTCTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGG 408608
Query 269224 ATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281
||||| ||||| ||||| ||||| | ||||||||||| || || || || |||
Sbjct 408607 CTTAACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCT 408550
>seq404
Length=684826
Score = 172 bits (190), Expect = 1e-37
Identities = 164/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||| | ||| |||||||||||||| |||||||| || ||||| | |||| ||||||||
Sbjct 506557 TACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTC 506498
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
|| || || ||||| ||||| | | |||||| || || || ||||||||||| || ||
Sbjct 506497 AAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG 506438
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
||| || ||||| |||||||| | |||||| ||| || ||||| | || || || ||
Sbjct 506437 AATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTT 506378
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||| | |||||||||||| || |||||
Sbjct 506377 ACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 161 bits (178), Expect = 2e-34
Identities = 176/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | ||| || | ||| | ||||||||| || || |||||||| ||
Sbjct 506349 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCG 506290
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || | || ||||| || ||||| || ||||| || | | |||||||| |||
Sbjct 506289 GACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGA 506230
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||||||||| |||||||| ||||| |||||||| | |||||| |||||
Sbjct 506229 GGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCA 506170
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| | ||| || ||||| ||||| | ||| || || || |||||||| |||
Sbjct 506169 ACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATTG 506116
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | || || | ||||| |||||||||||| ||||| ||||||||
Sbjct 506805 ATACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCG 506746
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || | |||||||| | ||| || ||||| ||||| | | ||||||||| ||
Sbjct 506745 GACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGG 506686
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || ||||| || || || |||||||||| ||||| ||||||
Sbjct 506685 GGAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCA 506626
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || ||||| ||||| || || || | ||| || || ||||| |||||
Sbjct 506625 ACTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | ||| |||| ||| | |||||||||||||| || || |||||
Sbjct 509239 ATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCT 509180
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | ||| | ||| ||||| | ||| || || || || |||| | ||||| || ||
Sbjct 509179 GACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGG 509120
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||||||||| ||||| || ||||| |||||||| | |||||| |||||
Sbjct 509119 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCG 509060
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| ||| || || || || || || || || || || || |||||
Sbjct 509059 ACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 123 bits (136), Expect = 6e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | ||| ||||| ||||| || || ||||| || | || | ||| ||
Sbjct 509450 AAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATC 509391
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | ||||| || ||||| || | | || ||||| || || || |||||||||||
Sbjct 509390 TTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATC 509331
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||| || || || |||||||||| |||||| ||||| || || | ||||| ||
Sbjct 509330 TTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGT 509271
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| | || || || || || |||||
Sbjct 509270 CTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||||||||| |||||||| || || | || | ||| ||||| | ||||| |||
Sbjct 508978 GTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCTTCCAACTGTTTACCA 508919
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | || ||||| || || || ||||| || || |||||||| |||||
Sbjct 508918 GCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 508859
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| ||||| | ||||||| ||||| || |||| || || || || ||||| || ||
Sbjct 508858 ACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTTTCCAGTCAGGGTC 508799
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 508798 TTGACGAAGATTTGCAT 508782
>seq1431
Length=173026
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||| ||| | || ||||| || || || || ||||| |||| || | ||| |||||
Sbjct 151302 ACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCATCTTCA 151243
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| |||||||| ||||| |||| | ||||||||||| || ||||| ||||| ||||||
Sbjct 151242 AGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTGTCCTGA 151183
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||||| || || || || || ||||| |||||
Sbjct 151182 ATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATGGTCTTG 151123
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || | ||||| ||||| |||||||| ||
Sbjct 151122 CCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091
>seq1094
Length=241507
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
||||| | ||| || || || || || ||||| || ||||| || | || | ||| ||
Sbjct 166070 AGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCC 166129
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | |||||| |||||||| || | | |||||||| || || || |||||||| ||
Sbjct 166130 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 166189
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| || || || || |||||||| | || ||| ||| |||||||| | ||||| ||
Sbjct 166190 TGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTT 166249
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || || ||||| |||||||||||
Sbjct 166250 TTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151220752899736
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