Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq326 131 2e-25
seq43 131 2e-25
>seq326
Length=702362
Score = 131 bits (144), Expect = 2e-25
Identities = 272/404 (67%), Gaps = 6/404 (1%)
Strand=Plus/Minus
Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899
||| | ||| ||||| || | || || | ||| ||||| || || | || ||
Sbjct 510156 ATATACATGGGCATCGCCCAATGTGTGTACAAAATCACCAGGCTTTAGGCCAGTTATGTG 510097
Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959
||||| | ||| || || || ||||| || || | || || ||||| ||||| |||||
Sbjct 510096 GGCAATCATATAGGTCAACAAGGCATATGAGGCAATGTTGAATGGTACTCCTAAGCCCAT 510037
Query 6960 ATCTGCTGATCTTTGATAACATTGACAAGATAA---AATATTGTCTATAGCATAAAATTG 7016
|| || | |||||| |||||||||||| | |||| | | ||||||| ||
Sbjct 510036 GTCGGCACTGCGTTGATATAATTGACAAGATAGCTCACCATTGGCAA---CATAAAACTG 509980
Query 7017 ACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGT 7076
||| |||||| ||||| ||| | ||| || || ||||||||||| |
Sbjct 509979 GGCCAAGCAATGACAGGGAGGCAAAGCCATCTGCGGCATGTCCATGGGATTCCAAGCGGA 509920
Query 7077 CATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTG 7136
||| | |||||||| |||| ||||| || || | | |||| || || |||
Sbjct 509919 CATCATGATACGTCTGTCATCGGGATTAGTGCGTATTGTATGAATAACCTGTTTTAGTTG 509860
Query 7137 ATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCT 7196
|| | ||||| ||||| ||| || ||| || || |||||||||||||| |
Sbjct 509859 GTCCACACCCTCGTTGTCATAGTTATCGTGGCAAGTTCGGTACTTAGCTCCAAAATGACG 509800
Query 7197 CCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGAT 7240
||| ||||| ||||| | |||||| ||||||||||| || ||||
Sbjct 509799 CCACTGAAAACCATATACAGGACCCAAATCACCTTCCTCTCGAT 509756
>seq43
Length=1683053
Score = 131 bits (144), Expect = 2e-25
Identities = 269/398 (68%), Gaps = 24/398 (6%)
Strand=Plus/Minus
Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT------ 164775
||||| | ||| ||||||| || || ||||| ||||||| |||||||| |
Sbjct 421995 TTACACATAATTATTTTTGACGAAATCGATGCAATTTGCAAGCAACGTGGTTCTGTTGCT 421936
Query 164776 ------AATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829
| | | |||||||| | ||||| ||||||||| | | || || ||||||||
Sbjct 421935 GGCAACAGTGGTGTTCATGATACCGTGGTCAATCAGTTGTTGGCCAAGATTGATGGTGTC 421876
Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889
|| || ||||||||| || | | ||||||||||| || | ||| | ||||| |||
Sbjct 421875 GAGCAATTGAATAATATTCTAGTCATTGGTATGACCAATCGTCGTGACATGATTGACGAT 421816
Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949
|| ||| | || |||||||| || ||| | |||| ||||| | || ||| | | |
Sbjct 421815 GCCTTACTGCGTCCTGGTCGTTTGGAAGTTCAAATGGAAATCAGTTTGCCCAATGAGCAG 421756
Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGAT----ATATT 165005
|| || ||||||| |||| | ||| || ||| | | | ||||| |||
Sbjct 421755 GGTCGTTGTCAAATTCTAAATATCCAT---ACT-AAACGTATGC--GTGATTTCAATAAG 421702
Query 165006 AT--CTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCT 165063
|| || | |||||||||| || || | |||||| || || |||| ||||| |||
Sbjct 421701 ATTGCTGCAGATGTAGATTGCAAAGAACTTGCTGCCTCCACCAAGAATTTCAGTGGAGCT 421642
Query 165064 GAATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101
||||| ||||| || || | || || ||||| || ||
Sbjct 421641 GAATTGGAGGGTTTGGTGCGTGCTGCCCAATCTACTGC 421604
Score = 118 bits (130), Expect = 1e-21
Identities = 185/258 (72%), Gaps = 9/258 (3%)
Strand=Plus/Minus
Query 164448 TTTCAGACGAGCATTTGCTTCTAGA-TCAGTTCCTATCGAAATAATaaaaaaaTTAGGCT 164506
|||| |||| |||||||||||| | ||| |||| ||||| || | |||| ||||
Sbjct 422347 TTTC-GACGTGCATTTGCTTCTCGCGTCA-TTCCACCAGAAATTATTGAGCAATTGGGCT 422290
Query 164507 GTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGG 164566
||||||| | || || ||| |||| |||| || |||||| ||| |||||||| ||||
Sbjct 422289 GTAAACACGTTAAGGGTATTCTATTGTATGGTCCACCTGGTACCGGCAAAACATTGATGG 422230
Query 164567 CTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTG 164623
| || |||| || | |||||| | || || ||||||||| ||||||||
Sbjct 422229 CCCGTCAAATTGG-CACCATGTTAAATGCCAGGGAGCC--TAAAATTGTAAATGGTCCAC 422173
Query 164624 AATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGG 164683
| | ||| | |||||||| |||||||||||||| || || | || || ||||
Sbjct 422172 AGATTTTGGATAAATATGTTGGTGAGTCAGAAGCCAACATTCGTCGCTTATTCGCTGAGG 422113
Query 164684 CTGAAGAAGAACAAAAGA 164701
| ||||||||| ||||||
Sbjct 422112 CCGAAGAAGAAGAAAAGA 422095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595782306367200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |