Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq326 131 2e-25 seq43 131 2e-25 >seq326 Length=702362 Score = 131 bits (144), Expect = 2e-25 Identities = 272/404 (67%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||| | ||| ||||| || | || || | ||| ||||| || || | || || Sbjct 510156 ATATACATGGGCATCGCCCAATGTGTGTACAAAATCACCAGGCTTTAGGCCAGTTATGTG 510097 Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959 ||||| | ||| || || || ||||| || || | || || ||||| ||||| ||||| Sbjct 510096 GGCAATCATATAGGTCAACAAGGCATATGAGGCAATGTTGAATGGTACTCCTAAGCCCAT 510037 Query 6960 ATCTGCTGATCTTTGATAACATTGACAAGATAA---AATATTGTCTATAGCATAAAATTG 7016 || || | |||||| |||||||||||| | |||| | | ||||||| || Sbjct 510036 GTCGGCACTGCGTTGATATAATTGACAAGATAGCTCACCATTGGCAA---CATAAAACTG 509980 Query 7017 ACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGT 7076 ||| |||||| ||||| ||| | ||| || || ||||||||||| | Sbjct 509979 GGCCAAGCAATGACAGGGAGGCAAAGCCATCTGCGGCATGTCCATGGGATTCCAAGCGGA 509920 Query 7077 CATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTG 7136 ||| | |||||||| |||| ||||| || || | | |||| || || ||| Sbjct 509919 CATCATGATACGTCTGTCATCGGGATTAGTGCGTATTGTATGAATAACCTGTTTTAGTTG 509860 Query 7137 ATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCT 7196 || | ||||| ||||| ||| || ||| || || |||||||||||||| | Sbjct 509859 GTCCACACCCTCGTTGTCATAGTTATCGTGGCAAGTTCGGTACTTAGCTCCAAAATGACG 509800 Query 7197 CCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGAT 7240 ||| ||||| ||||| | |||||| ||||||||||| || |||| Sbjct 509799 CCACTGAAAACCATATACAGGACCCAAATCACCTTCCTCTCGAT 509756 >seq43 Length=1683053 Score = 131 bits (144), Expect = 2e-25 Identities = 269/398 (68%), Gaps = 24/398 (6%) Strand=Plus/Minus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT------ 164775 ||||| | ||| ||||||| || || ||||| ||||||| |||||||| | Sbjct 421995 TTACACATAATTATTTTTGACGAAATCGATGCAATTTGCAAGCAACGTGGTTCTGTTGCT 421936 Query 164776 ------AATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 | | | |||||||| | ||||| ||||||||| | | || || |||||||| Sbjct 421935 GGCAACAGTGGTGTTCATGATACCGTGGTCAATCAGTTGTTGGCCAAGATTGATGGTGTC 421876 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 || || ||||||||| || | | ||||||||||| || | ||| | ||||| ||| Sbjct 421875 GAGCAATTGAATAATATTCTAGTCATTGGTATGACCAATCGTCGTGACATGATTGACGAT 421816 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 || ||| | || |||||||| || ||| | |||| ||||| | || ||| | | | Sbjct 421815 GCCTTACTGCGTCCTGGTCGTTTGGAAGTTCAAATGGAAATCAGTTTGCCCAATGAGCAG 421756 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGAT----ATATT 165005 || || ||||||| |||| | ||| || ||| | | | ||||| ||| Sbjct 421755 GGTCGTTGTCAAATTCTAAATATCCAT---ACT-AAACGTATGC--GTGATTTCAATAAG 421702 Query 165006 AT--CTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCT 165063 || || | |||||||||| || || | |||||| || || |||| ||||| ||| Sbjct 421701 ATTGCTGCAGATGTAGATTGCAAAGAACTTGCTGCCTCCACCAAGAATTTCAGTGGAGCT 421642 Query 165064 GAATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 ||||| ||||| || || | || || ||||| || || Sbjct 421641 GAATTGGAGGGTTTGGTGCGTGCTGCCCAATCTACTGC 421604 Score = 118 bits (130), Expect = 1e-21 Identities = 185/258 (72%), Gaps = 9/258 (3%) Strand=Plus/Minus Query 164448 TTTCAGACGAGCATTTGCTTCTAGA-TCAGTTCCTATCGAAATAATaaaaaaaTTAGGCT 164506 |||| |||| |||||||||||| | ||| |||| ||||| || | |||| |||| Sbjct 422347 TTTC-GACGTGCATTTGCTTCTCGCGTCA-TTCCACCAGAAATTATTGAGCAATTGGGCT 422290 Query 164507 GTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGG 164566 ||||||| | || || ||| |||| |||| || |||||| ||| |||||||| |||| Sbjct 422289 GTAAACACGTTAAGGGTATTCTATTGTATGGTCCACCTGGTACCGGCAAAACATTGATGG 422230 Query 164567 CTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTG 164623 | || |||| || | |||||| | || || ||||||||| |||||||| Sbjct 422229 CCCGTCAAATTGG-CACCATGTTAAATGCCAGGGAGCC--TAAAATTGTAAATGGTCCAC 422173 Query 164624 AATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGG 164683 | | ||| | |||||||| |||||||||||||| || || | || || |||| Sbjct 422172 AGATTTTGGATAAATATGTTGGTGAGTCAGAAGCCAACATTCGTCGCTTATTCGCTGAGG 422113 Query 164684 CTGAAGAAGAACAAAAGA 164701 | ||||||||| |||||| Sbjct 422112 CCGAAGAAGAAGAAAAGA 422095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595782306367200