Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1583 118 6e-22 >seq1583 Length=130261 Score = 118 bits (130), Expect = 6e-22 Identities = 190/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 3875 GGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAA 3934 || || |||||| | ||||| || || || || || ||||| || | |||||||| ||| Sbjct 38707 GGAGTGCATTTTGTTATGGCCGATGGAGGCTTTTCTGTTGAAGGCGAGGAAAATATACAA 38648 Query 3935 GAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGA 3994 ||||| |||| ||| || | || | || ||||| | | || || | | | | ||| Sbjct 38647 GAAATACTATCTAAACAGTTATACCTATGCCAATGCCTGACAGCTTTAAAGTTGCTGCGA 38588 Query 3995 ATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTA 4054 | |||| || ||| | ||| |||| |||||||||||| | ||||| | |||| || Sbjct 38587 ACCAATGGTAGTTTTGTGGTGAAACTTTTTGATATATTTACAACATTTAGCGTTGGTCTA 38528 Query 4055 GTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATC--GC 4112 || ||| | ||||| | || ||| ||| ||| ||| |||| ||| | || | | Sbjct 38527 GTATATCTAATGTACAAATGTTTCGATCAAATTGCCATTATCAAGCCAAA--CAGCAGTC 38470 Query 4113 GACCGGCCAATTCTGAAAGATATTTGGTGTG 4143 | ||||| || |||||||| |||||||| || Sbjct 38469 GCCCGGCAAACTCTGAAAGGTATTTGGTATG 38439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276513012475126