Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq355 127 1e-24 seq389 123 1e-23 seq301 120 2e-22 seq400 109 3e-19 seq326 109 3e-19 >seq355 Length=652764 Score = 127 bits (140), Expect = 1e-24 Identities = 84/94 (89%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || || |||||| | | |||||||||||| |||||||||| ||||||||||||||||| Sbjct 205983 AAATATTAAAAAGTTATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 206042 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 206043 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 206076 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| |||||| ||||| ||||||||| |||||||||| |||||||||||||||||| Sbjct 205515 TAAAAAAAAAGTAAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 205574 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||| ||||||||||||||||||||| Sbjct 205575 CACGACGCTCTAACCAACTGAGCTAATGGGCCG 205607 >seq389 Length=585855 Score = 123 bits (136), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | |||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 367904 ATAAAAACTTGAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 367963 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 367964 GACGCTCTAACCAACTGAGCTAATGGGCC 367992 Score = 123 bits (136), Expect = 1e-23 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 399416 TAAAAAATAGACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 399357 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 399356 CGCTCTAACCAACTGAGCTAATGGGCC 399330 Score = 120 bits (132), Expect = 2e-22 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | | ||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 360280 ATAAAAACTGTAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 360221 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 360220 ACGCTCTAACCAACTGAGCTAATGGGCC 360193 Score = 118 bits (130), Expect = 6e-22 Identities = 79/86 (92%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11446 AAAAT-CAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 360763 AAAATACAAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 360704 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 360703 GCTCTAACCAACTGAGCTAATGGGCC 360678 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 362627 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 362686 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 362687 CTGAGCTAATGGGCCG 362702 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 379900 AAAATATATATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 379841 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 379840 GCTCTAACCAACTGAGCTAATGGGCC 379815 Score = 114 bits (126), Expect = 7e-21 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| || ||||| || || | ||||||||| |||||||||| |||||||||||||| Sbjct 362201 GAAATATCAAAAAGTCTAAGTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 362260 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 362261 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 362296 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 358668 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 358609 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 358608 TGAGCTAATGGGCC 358595 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 370742 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 370801 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 370802 TGAGCTAATGGGCC 370815 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 371518 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 371577 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 371578 TGAGCTAATGGGCC 371591 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 377212 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 377271 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 377272 TGAGCTAATGGGCC 377285 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 380323 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 380382 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 380383 TGAGCTAATGGGCC 380396 Score = 113 bits (124), Expect = 2e-20 Identities = 90/105 (86%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||||| || ||||||| | || ||||||||| |||||||||| |||||||||| Sbjct 398309 AATATAAAAA-AATAAAAG-TAAATGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGC 398252 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 398251 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC-TCGA 398208 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 405609 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 405550 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 405549 TGAGCTAATGGGCC 405536 >seq301 Length=696915 Score = 120 bits (132), Expect = 2e-22 Identities = 88/101 (87%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| || ||||| |||| || ||||||||||| |||||||||| ||||||||| Sbjct 412314 AAATA-AGGATTAAAAAAATATTG--TTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 412258 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 412257 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 412217 Score = 118 bits (130), Expect = 6e-22 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 11421 ATCCAGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTC 11480 || ||| ||| || | |||| | |||| || |||||||||| |||||||||| | Sbjct 419177 ATTCAGCGAATTAAACAATTTACAAAATATTTTTCTGGCCCATGAGGGGATCGAACCCGC 419236 Query 11481 GACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 419237 GACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 419285 >seq400 Length=585068 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 10479 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10420 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 10419 TGAGCTAATGGGCC 10406 >seq326 Length=702362 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 263840 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 263781 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 263780 TGAGCTAATGGGCC 263767 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261452823061192