Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 125 6e-24
seq404 125 6e-24
seq1431 123 2e-23
>seq1094
Length=241507
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| |||||||| || |||||||| | ||| || || || ||| |||||||
Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTCC 166132
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| ||||| || ||||||| || | ||| |||||||| || |||||||||||||| |
Sbjct 166133 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 166192
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
||||| |||||||| | | |||||| | | || || || | || ||||||||
Sbjct 166193 ATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTA 166252
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || ||||||||||||||
Sbjct 166253 CCGGTTAGGGTCTTGACAAAGATCTGCAT 166281
>seq404
Length=684826
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || | |||||||||||||| | ||||||||| || || ||| |||
Sbjct 506328 ACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCC 506269
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|||||||| ||| ||||||| || | ||| |||||||||||||| |||||||| || | |
Sbjct 506268 AGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 506209
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || || || || | | || |||| | | || || || | |||||||| ||
Sbjct 506208 ATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTG 506149
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| | || ||||| |||||||||||
Sbjct 506148 CCAGTTAATGTCTTCACGAAGATCTGCAT 506120
Score = 118 bits (130), Expect = 1e-21
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
|||||||| | || ||||| || || | |||||||| | | | ||| || ||| |
Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATC--TGACAATGTACGACCATCTT 508933
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||| |||||| || | ||||| || | |||||||||||| ||||||||||| ||||| |
Sbjct 508932 CCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTT 508873
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
||| || || |||||| | | || || | | ||||| || | ||||||||||
Sbjct 508872 GAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTT 508813
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||| || || || || ||||| |||||
Sbjct 508812 TTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
|||||| || | || |||||||| || | ||| || || || ||| ||| ||
Sbjct 509447 CACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTC 509388
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| |||||| ||| ||||||| || | |||||||||||| ||||| |||||||| || |
Sbjct 509387 CAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTG 509328
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|||||| |||||||| | | || |||| | | || || || | ||| || || ||
Sbjct 509327 AATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCTT 509268
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| | ||| || || || || |||||
Sbjct 509267 TCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 102 bits (112), Expect = 7e-17
Identities = 155/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| ||||| ||||| |||||||| ||||| | || ||||| || |||| |
Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAA--TGTTCGCC 506505
Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
|| || ||||| || || | || || |||| || || ||||| || || |||||||
Sbjct 506504 CGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTT 506445
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | |||||| || || || | | || |||| | || || || | ||||
Sbjct 506444 TGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGA 506385
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||||| ||||| | ||||| |||||||| |||||||
Sbjct 506384 TGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATGC 506346
Score = 102 bits (112), Expect = 7e-17
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|||||||| || || | ||| || || || |||| ||| |||| || || |||
Sbjct 509206 GTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCCAATTGCTTGCCG 509147
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
| |||||||| | ||| || ||||| ||||| |||||||| || | |||||| || ||
Sbjct 509146 GCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGAATTTTAGCTTTC 509087
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| ||| ||| || | | ||||| || | |||||||||||||| || || ||
Sbjct 509086 ACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTTCCTGTCAGGGTC 509027
Query 94991 TTCACAAAGATCTGCATGC 95009
|| || ||||| |||||||
Sbjct 509026 TTGACGAAGATTTGCATGC 509008
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
||||| || || || | ||||| ||||| || | ||| || ||| || |||| ||
Sbjct 507018 CGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTACGAC 506961
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
||| |||| ||| || ||| | || || || | || || ||||| ||||| ||||| |
Sbjct 506960 CATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCT 506901
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | ||| || || || ||| ||| ||||| | | ||||| || | ||||
Sbjct 506900 TGTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGA 506841
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||| ||||| | || || || ||||| |||||
Sbjct 506840 TGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856
||||| || | |||||||| ||||| | |||||| ||| || || || | || |
Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCG--TCTT 506727
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||| || || || | || || || | || |||||||| ||||||||||||||||| |
Sbjct 506726 CCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTT 506667
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|||||| ||||| || | | ||| |||| | || || || | ||||| ||||
Sbjct 506666 GAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTT 506607
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|||| || | || || || || || |||||||
Sbjct 506606 TTCCCGTTAATGTCTTAACGAATATTTGCATGC 506574
>seq1431
Length=173026
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || | ||||||||| || || || | || ||||||||||| | ||| || || |
Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTC--TG 151263
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
||| || || ||| || |||||||||||| |||| ||||| | ||| ||||| || |
Sbjct 151262 ATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTG 151203
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||| || |||||||| | ||| || ||||| || | | || |||| | || |
Sbjct 151202 GAATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAA 151143
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| |||| ||| ||||| || || || | |||||| ||||| ||||||||
Sbjct 151142 CTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448223720967120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |