Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1408 196 8e-46 seq368 168 1e-37 seq200 165 1e-36 seq37 161 2e-35 seq25 105 1e-18 >seq1408 Length=179247 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || |||||||||||||| ||||||||||| || || Sbjct 166658 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAACATCCAAGGTATCACCAAGCCTGCAAT 166599 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| ||||||||||||| || || |||||| ||||||||||| | || ||||| | Sbjct 166598 CAGACGTTTGGCTCGTCGTGGCGGTGTAAAGCGTATCTCTGGATTGATTTACGAAGAAAC 166539 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | || | | | |||||| | ||||||| || ||| || || Sbjct 166538 CCGTGGTGTCCTGAAGGTGTTTTTGGAAAACGTTATTCGTGATGCTGTCACCTACACTGA 166479 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| ||||| || |||||| | |||||| ||||||| || ||||| | ||||| Sbjct 166478 ACACGCTAAGCGTAAAACCGTCACCGCTATGGATGTCGTCTACGCTTTGAAGAGACAAGG 166419 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 166418 CCGCACTTTGTACGGTTTCGGCGGTTAA 166391 >seq368 Length=610090 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || |||||||||||||| ||||||||||| || || Sbjct 604975 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAACATCCAAGGTATCACCAAGCCTGCAAT 605034 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| ||||||||||| | || | |||| | ||| ||||||| | || ||| | | Sbjct 605035 CAGGCGTTTGGCTCGTCGTTGCGGTGGAAAGCTTATCTATGGATTGATTTACGAAAAAAC 605094 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||| | || | | | |||||| | ||||||| || |||||| || Sbjct 605095 CCGTGGTGTCCTGAAAGTGTTTTTGGAAAACGTTATTCGTGATGCTGTCACCTATACTGA 605154 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| ||||| || |||||| | |||||| ||||||| || ||||| ||||| Sbjct 605155 ACACGCTAAGCGTAAAACCGTCACCGCTATGGATGTCGTCTACGCTTTGAAGAAACAAGG 605214 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| ||| | ||| Sbjct 605215 CCGCACTTTGTACGGTTTCGGAGGATAA 605242 >seq200 Length=907605 Score = 165 bits (182), Expect = 1e-36 Identities = 193/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||||| | | | || ||||| |||||||| ||||| ||||| || || Sbjct 852883 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAATATCCAAGGTATCACAAAGCCTGCAAT 852824 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | | | ||||||||||| || || |||||| ||||||||||| | || ||||| | Sbjct 852823 CAGACATTTAGCTCGTCGTGGCGGTGTAAAGCGTATCTCTGGATTGATTTACGAAGAAAC 852764 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | || | | | |||||| | ||||||| || |||| || || Sbjct 852763 CCGTGGTGTCCTAAAAGTATTTTTGGAAAACGTTATTCGTGATGCTGTCAACTACACTGA 852704 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| ||||| || ||||| | |||||| ||||||| || ||||| | ||||| Sbjct 852703 ACACGCTAAGCGTAAAACCATCACCGCTATGGATGTCGTCTACGCTTTGAAGAGACAAGG 852644 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 852643 CCGCACTTTGTACGGTTTCGG 852623 Score = 140 bits (154), Expect = 5e-29 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 16486 AGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGA 16545 || |||| | ||| ||||||||||||| || || |||||| ||||||||||| | || || Sbjct 883124 AGGTATCAGACGTTTGGCTCGTCGTGGCGGTGTAAAGCGTATCTCTGGATTGATTTACGA 883065 Query 16546 AGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTA 16605 ||| | |||| ||| |||| | || | | | |||||| | ||||||| || ||| Sbjct 883064 AGAAACCCGTGGTGTCCTGAAAGTGTTTTTGGAAAACGTTATTCGTGATGCTGTCACCTA 883005 Query 16606 TACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACG 16665 || || |||||||| ||||| || |||||| | |||||| ||||||| || ||||| | Sbjct 883004 CACTGAACACGCTAAGCGTAAAACCGTCACCGCTATGGATGTCGTCTACGCTTTGAAGAG 882945 Query 16666 TCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| | | || ||||| || Sbjct 882944 ACAAGGCCGCACTTTGTACGGTTTCGG 882918 Score = 114 bits (126), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| |||||||| | | | | || |||||||||||| | ||||||||||| || | Sbjct 820943 CGTTAAACGTCATCGTAAGTGT-TGCGTGATAACATCCAATGTATCACCAAGCCTGCCGT 820885 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| || ||||||||||||| || |||||| | ||||||||| | || ||||| | Sbjct 820884 CAGACGTTTGACTCGTCGTGGTGGTGTAAAGCGTATTTCTGGATTGATTTACGAAGAAAC 820825 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTA-TACCG 16610 |||| ||| | || | || | | | |||||| | |||||| | | || | || | Sbjct 820824 CCGTGGTGTCCTAAAAGTGTTTTTGGAAAACGTTATTCGTGATGC-TGCGACCAGCACTG 820766 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 | ||| |||| ||||| || |||| | | ||||| Sbjct 820765 AACACTCTAAGCGTAAAACCGTCAACGCTATGGA 820732 >seq37 Length=1651044 Score = 161 bits (178), Expect = 2e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| ||||||| | | | || |||||||| ||||| ||||||||||| || || Sbjct 375715 GCTAAACGTCATCCTAAAGTGTTGCGTGATAACATTCAAGGTATCACCAAGCCTGCAATT 375774 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | || ||||||||||||| || || |||||| |||||| |||| | || ||||| | | Sbjct 375775 AGATGTTTGGCTCGTCGTGGCGGTGTAAAGCGTATCTCTGAATTGATATACGAAGAAACT 375834 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| |||| | || | ||| |||||| | ||||||| || ||| || | Sbjct 375835 CGTGGTGTTCTGAAAGTGTTTTTGGAGAACGTTATTCGTGATGCTGTCACCTACACTAAA 375894 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| ||||| || | |||| | |||||| |||| || || ||||| | |||||| Sbjct 375895 CACGCTAAGCGTAAAACCGCCACCGCTATGGATGTCGTGTACGCTTTGAAGAGACAAGGC 375954 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| || ||||| Sbjct 375955 CCCACTTTGTACGGTTTCGGCGGTTAA 375981 >seq25 Length=1946739 Score = 105 bits (116), Expect = 1e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || ||||| ||||| || |||||||| ||||| || Sbjct 1231896 CGCAAAGCGTCACCGAAAGGTACTACGTGATAATATCCAGGGTATCACCAAACCAGCCAT 1231955 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||| ||||| || ||| | || |||||| | || ||||| | Sbjct 1231956 ACGTCGTCTGGCTCGTCGTGGAGGAGTAAAACGTATATCAGGATTGATATACGAAGAAAC 1232015 Query 16552 TCGTGATGTTTTGAAG 16567 ||| | ||| || ||| Sbjct 1232016 TCGCGGTGTATTAAAG 1232031 Score = 100 bits (110), Expect = 4e-17 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 ||||| || |||||| |||||||| ||||| || ||||||||| | ||||| | ||| Sbjct 1232149 GATGCAGTCACCTATACTGAGCACGCCAAACGCAAAACTGTCACCGCTATGGACGTGGTC 1232208 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| ||||||||||||||||||| | || |||||||| ||||| Sbjct 1232209 TATGCCTTGAAACGTCAAGGCCGTACTTTGTACGGTTTTGGTGGTTAA 1232256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064189915106