Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1408 196 8e-46
seq368 168 1e-37
seq200 165 1e-36
seq37 161 2e-35
seq25 105 1e-18
>seq1408
Length=179247
Score = 196 bits (216), Expect = 8e-46
Identities = 204/268 (76%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | | || |||||||||||||| ||||||||||| || ||
Sbjct 166658 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAACATCCAAGGTATCACCAAGCCTGCAAT 166599
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | ||| ||||||||||||| || || |||||| ||||||||||| | || ||||| |
Sbjct 166598 CAGACGTTTGGCTCGTCGTGGCGGTGTAAAGCGTATCTCTGGATTGATTTACGAAGAAAC 166539
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| ||||| | || | | | |||||| | ||||||| || ||| || ||
Sbjct 166538 CCGTGGTGTCCTGAAGGTGTTTTTGGAAAACGTTATTCGTGATGCTGTCACCTACACTGA 166479
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| ||||| || |||||| | |||||| ||||||| || ||||| | |||||
Sbjct 166478 ACACGCTAAGCGTAAAACCGTCACCGCTATGGATGTCGTCTACGCTTTGAAGAGACAAGG 166419
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || ||||| || |||||
Sbjct 166418 CCGCACTTTGTACGGTTTCGGCGGTTAA 166391
>seq368
Length=610090
Score = 168 bits (186), Expect = 1e-37
Identities = 198/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | | || |||||||||||||| ||||||||||| || ||
Sbjct 604975 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAACATCCAAGGTATCACCAAGCCTGCAAT 605034
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | ||| ||||||||||| | || | |||| | ||| ||||||| | || ||| | |
Sbjct 605035 CAGGCGTTTGGCTCGTCGTTGCGGTGGAAAGCTTATCTATGGATTGATTTACGAAAAAAC 605094
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| |||| | || | | | |||||| | ||||||| || |||||| ||
Sbjct 605095 CCGTGGTGTCCTGAAAGTGTTTTTGGAAAACGTTATTCGTGATGCTGTCACCTATACTGA 605154
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| ||||| || |||||| | |||||| ||||||| || ||||| |||||
Sbjct 605155 ACACGCTAAGCGTAAAACCGTCACCGCTATGGATGTCGTCTACGCTTTGAAGAAACAAGG 605214
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || ||||| ||| | |||
Sbjct 605215 CCGCACTTTGTACGGTTTCGGAGGATAA 605242
>seq200
Length=907605
Score = 165 bits (182), Expect = 1e-36
Identities = 193/261 (74%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| |||||||| | | | || ||||| |||||||| ||||| ||||| || ||
Sbjct 852883 CGCTAAACGTCATCGTAAAGTGTTGCGTGATAATATCCAAGGTATCACAAAGCCTGCAAT 852824
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | | | | ||||||||||| || || |||||| ||||||||||| | || ||||| |
Sbjct 852823 CAGACATTTAGCTCGTCGTGGCGGTGTAAAGCGTATCTCTGGATTGATTTACGAAGAAAC 852764
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| | || | || | | | |||||| | ||||||| || |||| || ||
Sbjct 852763 CCGTGGTGTCCTAAAAGTATTTTTGGAAAACGTTATTCGTGATGCTGTCAACTACACTGA 852704
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| ||||| || ||||| | |||||| ||||||| || ||||| | |||||
Sbjct 852703 ACACGCTAAGCGTAAAACCATCACCGCTATGGATGTCGTCTACGCTTTGAAGAGACAAGG 852644
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || ||||| ||
Sbjct 852643 CCGCACTTTGTACGGTTTCGG 852623
Score = 140 bits (154), Expect = 5e-29
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 16486 AGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGA 16545
|| |||| | ||| ||||||||||||| || || |||||| ||||||||||| | || ||
Sbjct 883124 AGGTATCAGACGTTTGGCTCGTCGTGGCGGTGTAAAGCGTATCTCTGGATTGATTTACGA 883065
Query 16546 AGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTA 16605
||| | |||| ||| |||| | || | | | |||||| | ||||||| || |||
Sbjct 883064 AGAAACCCGTGGTGTCCTGAAAGTGTTTTTGGAAAACGTTATTCGTGATGCTGTCACCTA 883005
Query 16606 TACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACG 16665
|| || |||||||| ||||| || |||||| | |||||| ||||||| || ||||| |
Sbjct 883004 CACTGAACACGCTAAGCGTAAAACCGTCACCGCTATGGATGTCGTCTACGCTTTGAAGAG 882945
Query 16666 TCAAGGCCGTAAGATTTATGGTTTTGG 16692
|||||||| | | || ||||| ||
Sbjct 882944 ACAAGGCCGCACTTTGTACGGTTTCGG 882918
Score = 114 bits (126), Expect = 2e-21
Identities = 156/214 (73%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||| |||||||| | | | | || |||||||||||| | ||||||||||| || |
Sbjct 820943 CGTTAAACGTCATCGTAAGTGT-TGCGTGATAACATCCAATGTATCACCAAGCCTGCCGT 820885
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | ||| || ||||||||||||| || |||||| | ||||||||| | || ||||| |
Sbjct 820884 CAGACGTTTGACTCGTCGTGGTGGTGTAAAGCGTATTTCTGGATTGATTTACGAAGAAAC 820825
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTA-TACCG 16610
|||| ||| | || | || | | | |||||| | |||||| | | || | || |
Sbjct 820824 CCGTGGTGTCCTAAAAGTGTTTTTGGAAAACGTTATTCGTGATGC-TGCGACCAGCACTG 820766
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644
| ||| |||| ||||| || |||| | | |||||
Sbjct 820765 AACACTCTAAGCGTAAAACCGTCAACGCTATGGA 820732
>seq37
Length=1651044
Score = 161 bits (178), Expect = 2e-35
Identities = 196/267 (73%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| ||||||| | | | || |||||||| ||||| ||||||||||| || ||
Sbjct 375715 GCTAAACGTCATCCTAAAGTGTTGCGTGATAACATTCAAGGTATCACCAAGCCTGCAATT 375774
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| || ||||||||||||| || || |||||| |||||| |||| | || ||||| | |
Sbjct 375775 AGATGTTTGGCTCGTCGTGGCGGTGTAAAGCGTATCTCTGAATTGATATACGAAGAAACT 375834
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||| |||| | || | ||| |||||| | ||||||| || ||| || |
Sbjct 375835 CGTGGTGTTCTGAAAGTGTTTTTGGAGAACGTTATTCGTGATGCTGTCACCTACACTAAA 375894
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| ||||| || | |||| | |||||| |||| || || ||||| | ||||||
Sbjct 375895 CACGCTAAGCGTAAAACCGCCACCGCTATGGATGTCGTGTACGCTTTGAAGAGACAAGGC 375954
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || ||||| || |||||
Sbjct 375955 CCCACTTTGTACGGTTTCGGCGGTTAA 375981
>seq25
Length=1946739
Score = 105 bits (116), Expect = 1e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | || || ||||| ||||| || |||||||| ||||| ||
Sbjct 1231896 CGCAAAGCGTCACCGAAAGGTACTACGTGATAATATCCAGGGTATCACCAAACCAGCCAT 1231955
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||||||||||||||| ||||| || ||| | || |||||| | || ||||| |
Sbjct 1231956 ACGTCGTCTGGCTCGTCGTGGAGGAGTAAAACGTATATCAGGATTGATATACGAAGAAAC 1232015
Query 16552 TCGTGATGTTTTGAAG 16567
||| | ||| || |||
Sbjct 1232016 TCGCGGTGTATTAAAG 1232031
Score = 100 bits (110), Expect = 4e-17
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651
||||| || |||||| |||||||| ||||| || ||||||||| | ||||| | |||
Sbjct 1232149 GATGCAGTCACCTATACTGAGCACGCCAAACGCAAAACTGTCACCGCTATGGACGTGGTC 1232208
Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||||| ||||||||||||||||||| | || |||||||| |||||
Sbjct 1232209 TATGCCTTGAAACGTCAAGGCCGTACTTTGTACGGTTTTGGTGGTTAA 1232256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79064189915106
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |