Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq305 158 1e-33
>seq305
Length=710094
Score = 158 bits (174), Expect = 1e-33
Identities = 453/694 (65%), Gaps = 14/694 (2%)
Strand=Plus/Plus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
||||||||||||||| ||||| | ||||||| |||||||||||||| ||||| ||
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
|| | |||| ||| | || | ||| || || ||||| ||||| | ||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAA-ACATGCAAAATCAC 21488
|| | | | || || | || | | ||||||||||| ||| ||||||||||
Sbjct 408502 GATACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATCAC 408560
Query 21489 AATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATC 21548
||||||||||||| || | ||| | || || || |||||||| |||||||||| |
Sbjct 408561 AATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGGC 408620
Query 21549 CTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAAC 21606
| | || || ||||| || || || ||||| ||| ||| ||||| ||||| |||||
Sbjct 408621 CACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTG--AAGAATATGCCTTCAAC 408678
Query 21607 GGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCC---AATATCCATTT 21663
|||||||| || | || |||||||| | ||| | |||| ||||||||
Sbjct 408679 AGCAGCAAAAGCTATTACACGTTCACCAAAATTAG---CAGAATCCGATGATATCCATGA 408735
Query 21664 TTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723
||||| | || ||| ||||| | || || ||||| || || || | ||
Sbjct 408736 CAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATA 408795
Query 21724 AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATG 21783
| || || ||| | || || |||||||| || ||
Sbjct 408796 TTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTG 408855
Query 21784 TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC 21843
| ||| || || || ||||| || || || || || | || || | ||| |||||
Sbjct 408856 AACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTC 408915
Query 21844 GGAATAAAATCGTTGAGCCAAG-TTTTCATTTACTATTCCATCACTGGCGGCAAAAAATG 21902
| |||||| | | |||| || ||||| ||||| ||||| ||| ||||| || |
Sbjct 408916 TTGAGAAAATC-TCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAG 408974
Query 21903 CCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAAT 21962
|||| | || || ||||||| ||| || ||||| | ||| | ||| || | | ||
Sbjct 408975 CCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATAT 409034
Query 21963 CTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996
|||| || | ||| ||||| ||| ||||||||
Sbjct 409035 CTTTAGACAGATCCACTTCCTCAACAGTCCAAAA 409068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531820735632080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |