Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq305 158 1e-33 >seq305 Length=710094 Score = 158 bits (174), Expect = 1e-33 Identities = 453/694 (65%), Gaps = 14/694 (2%) Strand=Plus/Plus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||||||||||||||| ||||| | ||||||| |||||||||||||| ||||| || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | |||| ||| | || | ||| || || ||||| ||||| | || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAA-ACATGCAAAATCAC 21488 || | | | || || | || | | ||||||||||| ||| |||||||||| Sbjct 408502 GATACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATCAC 408560 Query 21489 AATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATC 21548 ||||||||||||| || | ||| | || || || |||||||| |||||||||| | Sbjct 408561 AATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGGC 408620 Query 21549 CTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAAC 21606 | | || || ||||| || || || ||||| ||| ||| ||||| ||||| ||||| Sbjct 408621 CACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTG--AAGAATATGCCTTCAAC 408678 Query 21607 GGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCC---AATATCCATTT 21663 |||||||| || | || |||||||| | ||| | |||| |||||||| Sbjct 408679 AGCAGCAAAAGCTATTACACGTTCACCAAAATTAG---CAGAATCCGATGATATCCATGA 408735 Query 21664 TTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723 ||||| | || ||| ||||| | || || ||||| || || || | || Sbjct 408736 CAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATA 408795 Query 21724 AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATG 21783 | || || ||| | || || |||||||| || || Sbjct 408796 TTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTG 408855 Query 21784 TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC 21843 | ||| || || || ||||| || || || || || | || || | ||| ||||| Sbjct 408856 AACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTC 408915 Query 21844 GGAATAAAATCGTTGAGCCAAG-TTTTCATTTACTATTCCATCACTGGCGGCAAAAAATG 21902 | |||||| | | |||| || ||||| ||||| ||||| ||| ||||| || | Sbjct 408916 TTGAGAAAATC-TCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAG 408974 Query 21903 CCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAAT 21962 |||| | || || ||||||| ||| || ||||| | ||| | ||| || | | || Sbjct 408975 CCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATAT 409034 Query 21963 CTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 |||| || | ||| ||||| ||| |||||||| Sbjct 409035 CTTTAGACAGATCCACTTCCTCAACAGTCCAAAA 409068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531820735632080