Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1090 437 1e-117 seq305 255 7e-63 >seq1090 Length=275775 Score = 437 bits (484), Expect = 1e-117 Identities = 1245/1887 (66%), Gaps = 56/1887 (3%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| || | | || || ||||| || | | ||| ||||| ||||| || || Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || |||| || ||||| || || | |||| || | || || || | | Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| ||| Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 62233 | ||||| | ||||||||| | ||||| || | ||| | || | |||| |||| Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT-TCTTTGGGAAT 261338 Query 62234 GT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 | | | | || || ||||| |||| | ||||| |||| || || || |||| Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATC 261278 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 ||||| | ||||| ||| || |||| | ||| |||| || | | ||||| || Sbjct 261277 CCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACC 261218 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 || | ||| | || || ||||| || || |||||||| | | ||||| || || Sbjct 261217 CGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCC 261158 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 || |||||| ||||| || || || ||||| || |||| | | ||| | | ||| Sbjct 261157 CATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACC 261098 Query 62471 GTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62528 ||||| | ||| | || ||||| | |||||| ||| ||||| | || || Sbjct 261097 --ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTG 261040 Query 62529 NNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATC 62584 ||| || ||||| || ||||| | |||| ||| || || Sbjct 261039 TTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT----TCCTGGATACGTTTC 260984 Query 62585 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62644 || || || || | ||||| | ||||||||| || || || ||||| || ||||| || Sbjct 260983 ATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGT 260924 Query 62645 TTCGAAGATCTTCTTATTTAGATCTTGT--GCTTCCAGGCTATCAAATGGATAATTTAAG 62702 ||| || || | | ||| | || ||| || ||| ||| || | |||||| | | Sbjct 260923 TTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATG 260866 Query 62703 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62762 ||||| | | || || || || || |||||||| || || || | |||||| |||| Sbjct 260865 AGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTA 260806 Query 62763 GAGATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62820 || |||| | || ||| | | ||||| || || | |||||| ||||| |||||||| | Sbjct 260805 GAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTGC 260748 Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCT 62873 | | ||||| || ||||| ||| ||| ||||| ||| | || Sbjct 260747 GCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC- 260689 Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 ||||||||||||| | || || |||| || || || || | |||| | | Sbjct 260688 ---ACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCT 260632 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | ||||| | || || ||||| | ||| || || || || || || | |||||||||| Sbjct 260631 GAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGA 260572 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 ||||| || ||||| | |||||| | || ||| | ||||| |||||||| | || Sbjct 260571 TTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGG 260512 Query 63054 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGT-ATCT---CC 63108 ||||||||||| || ||| | || || | ||||| || | | ||| | || || Sbjct 260511 GATTCTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT---TCTGTTAGCTTTGCC 260456 Query 63109 TTTCTCTTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAAT 63167 || |||||||| | || || | | || || || || ||||| || | | | | Sbjct 260455 GGCCT-TTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGT 260398 Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || ||||||| | |||||||| | ||||| || |||| || | ||| ||| |||| Sbjct 260397 CCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATA 260338 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 || | ||| || ||||||||||| ||| || |||||||||| | ||| || || || || Sbjct 260337 AACAAATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCC 260279 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||||||||| | ||| | ||| | | || || |||||||| ||||||||||| || Sbjct 260278 GGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGAT 260219 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 ||| | | ||||| |||||| || |||||||| | ||| | || ||||| | Sbjct 260218 GGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAA 260159 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 ||||| ||||| || | | ||| || || | ||||| || |||| || | |||| Sbjct 260158 TACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCC 260099 Query 63467 ACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524 | || ||||| | | |||||| || || || || || ||| || || | Sbjct 260098 CTTAGCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCATA 260041 Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584 || || | | | | | | | || ||||| || ||| | | |||| | | || Sbjct 260040 GCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGG 259981 Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644 ||||| ||||| ||| ||||| | || | ||| ||| || || || || || || Sbjct 259980 AAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGG 259921 Query 63645 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703 ||||| | || || || || || || || ||||| || || ||||| ||| | Sbjct 259920 GTAAAGTAACGCTCGGACAACCAG-TTATAAGTTTCAATGGCCGAATCTATGTCCTCTCC 259862 Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763 |||||| ||||| || |||||||| | ||| || || || | ||| | ||||| || Sbjct 259861 ATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATT 259802 Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823 |||||||| | || || ||| | ||| ||||| ||||| |||||||| ||| || Sbjct 259801 CATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATC 259742 Query 63824 TCGTTCGTAAATAATAACCGAGTTGAG 63850 || ||||| | ||| |||||||||| Sbjct 259741 ACGGTCGTATACAATGGCCGAGTTGAG 259715 >seq305 Length=710094 Score = 255 bits (282), Expect = 7e-63 Identities = 483/704 (69%), Gaps = 9/704 (1%) Strand=Plus/Plus Query 33138 ATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 33197 ||| || || ||||| ||||| ||| | ||||||||||| || || | || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 33198 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG--AT 33255 ||| | || | ||||| ||||| ||||| || ||||| ||| |||| || || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 33256 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAA-ACATGCGAAATC 33314 ||| | ||| | | || |||| | || ||||||||||| ||| || ||||| Sbjct 408502 GATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATC 408558 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 || |||| ||| ||||| | || || |||||||| || || | ||||||||||| Sbjct 408559 ACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAG 408618 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 |||||| || || | ||| || ||||| || || || ||||| || ||||| || Sbjct 408619 GCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAAC 408678 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC--ATG-TATCCACTTTTG 33491 |||||||| || || | | || ||| || || || ||| |||||| Sbjct 408679 AGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAA 408738 Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551 ||||||||| || || |||| ||| ||||| ||||| |||||||| || | ||| | Sbjct 408739 AGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATATTC 408798 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 || | || |||||||| ||| || || || | || || ||||||||||| |||| Sbjct 408799 ACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAAC 408858 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 || || || || ||||| || || ||||| || | || || || | || || ||| Sbjct 408859 ATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTG 408918 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 | |||||| || | | ||| ||||| ||||| || || ||| ||||| || ||||| Sbjct 408919 AGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAA 408978 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791 ||||| || |||||| |||| | ||| ||||| | ||| ||| |||||||| Sbjct 408979 CACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTT 409038 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 ||| | ||| ||||| || || ||||||||||||||||| |||| Sbjct 409039 AGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622853430872720