Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 437 1e-117
seq305 255 7e-63
>seq1090
Length=275775
Score = 437 bits (484), Expect = 1e-117
Identities = 1245/1887 (66%), Gaps = 56/1887 (3%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
|||||||| || | | || || ||||| || | | ||| ||||| ||||| || ||
Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| |||| || ||||| || || | |||| || | || || || | |
Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
|| ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| |||
Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 62233
| ||||| | ||||||||| | ||||| || | ||| | || | |||| ||||
Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT-TCTTTGGGAAT 261338
Query 62234 GT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290
| | | | || || ||||| |||| | ||||| |||| || || || ||||
Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATC 261278
Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350
||||| | ||||| ||| || |||| | ||| |||| || | | ||||| ||
Sbjct 261277 CCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACC 261218
Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410
|| | ||| | || || ||||| || || |||||||| | | ||||| || ||
Sbjct 261217 CGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCC 261158
Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470
|| |||||| ||||| || || || ||||| || |||| | | ||| | | |||
Sbjct 261157 CATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACC 261098
Query 62471 GTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62528
||||| | ||| | || ||||| | |||||| ||| ||||| | || ||
Sbjct 261097 --ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTG 261040
Query 62529 NNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATC 62584
||| || ||||| || ||||| | |||| ||| || ||
Sbjct 261039 TTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT----TCCTGGATACGTTTC 260984
Query 62585 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62644
|| || || || | ||||| | ||||||||| || || || ||||| || ||||| ||
Sbjct 260983 ATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGT 260924
Query 62645 TTCGAAGATCTTCTTATTTAGATCTTGT--GCTTCCAGGCTATCAAATGGATAATTTAAG 62702
||| || || | | ||| | || ||| || ||| ||| || | |||||| | |
Sbjct 260923 TTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATG 260866
Query 62703 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62762
||||| | | || || || || || |||||||| || || || | |||||| ||||
Sbjct 260865 AGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTA 260806
Query 62763 GAGATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62820
|| |||| | || ||| | | ||||| || || | |||||| ||||| |||||||| |
Sbjct 260805 GAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTGC 260748
Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCT 62873
| | ||||| || ||||| ||| ||| ||||| ||| | ||
Sbjct 260747 GCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC- 260689
Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933
||||||||||||| | || || |||| || || || || | |||| | |
Sbjct 260688 ---ACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCT 260632
Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993
| ||||| | || || ||||| | ||| || || || || || || | ||||||||||
Sbjct 260631 GAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGA 260572
Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053
||||| || ||||| | |||||| | || ||| | ||||| |||||||| | ||
Sbjct 260571 TTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGG 260512
Query 63054 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGT-ATCT---CC 63108
||||||||||| || ||| | || || | ||||| || | | ||| | || ||
Sbjct 260511 GATTCTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT---TCTGTTAGCTTTGCC 260456
Query 63109 TTTCTCTTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAAT 63167
|| |||||||| | || || | | || || || || ||||| || | | | |
Sbjct 260455 GGCCT-TTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGT 260398
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
|| ||||||| | |||||||| | ||||| || |||| || | ||| ||| ||||
Sbjct 260397 CCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATA 260338
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286
|| | ||| || ||||||||||| ||| || |||||||||| | ||| || || || ||
Sbjct 260337 AACAAATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCC 260279
Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346
||||||||||| | ||| | ||| | | || || |||||||| ||||||||||| ||
Sbjct 260278 GGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGAT 260219
Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406
||| | | ||||| |||||| || |||||||| | ||| | || ||||| |
Sbjct 260218 GGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAA 260159
Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466
||||| ||||| || | | ||| || || | ||||| || |||| || | ||||
Sbjct 260158 TACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCC 260099
Query 63467 ACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524
| || ||||| | | |||||| || || || || || ||| || || |
Sbjct 260098 CTTAGCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCATA 260041
Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584
|| || | | | | | | | || ||||| || ||| | | |||| | | ||
Sbjct 260040 GCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGG 259981
Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644
||||| ||||| ||| ||||| | || | ||| ||| || || || || || ||
Sbjct 259980 AAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGG 259921
Query 63645 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703
||||| | || || || || || || || ||||| || || ||||| ||| |
Sbjct 259920 GTAAAGTAACGCTCGGACAACCAG-TTATAAGTTTCAATGGCCGAATCTATGTCCTCTCC 259862
Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763
|||||| ||||| || |||||||| | ||| || || || | ||| | ||||| ||
Sbjct 259861 ATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATT 259802
Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823
|||||||| | || || ||| | ||| ||||| ||||| |||||||| ||| ||
Sbjct 259801 CATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATC 259742
Query 63824 TCGTTCGTAAATAATAACCGAGTTGAG 63850
|| ||||| | ||| ||||||||||
Sbjct 259741 ACGGTCGTATACAATGGCCGAGTTGAG 259715
>seq305
Length=710094
Score = 255 bits (282), Expect = 7e-63
Identities = 483/704 (69%), Gaps = 9/704 (1%)
Strand=Plus/Plus
Query 33138 ATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 33197
||| || || ||||| ||||| ||| | ||||||||||| || || | ||
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 33198 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG--AT 33255
||| | || | ||||| ||||| ||||| || ||||| ||| |||| || ||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 33256 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAA-ACATGCGAAATC 33314
||| | ||| | | || |||| | || ||||||||||| ||| || |||||
Sbjct 408502 GATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAAATC 408558
Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374
|| |||| ||| ||||| | || || |||||||| || || | |||||||||||
Sbjct 408559 ACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAG 408618
Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434
|||||| || || | ||| || ||||| || || || ||||| || ||||| ||
Sbjct 408619 GCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAAC 408678
Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC--ATG-TATCCACTTTTG 33491
|||||||| || || | | || ||| || || || ||| ||||||
Sbjct 408679 AGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAA 408738
Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551
||||||||| || || |||| ||| ||||| ||||| |||||||| || | ||| |
Sbjct 408739 AGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATATTC 408798
Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611
|| | || |||||||| ||| || || || | || || ||||||||||| ||||
Sbjct 408799 ACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAAC 408858
Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671
|| || || || ||||| || || ||||| || | || || || | || || |||
Sbjct 408859 ATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTG 408918
Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731
| |||||| || | | ||| ||||| ||||| || || ||| ||||| || |||||
Sbjct 408919 AGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAA 408978
Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791
||||| || |||||| |||| | ||| ||||| | ||| ||| ||||||||
Sbjct 408979 CACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTT 409038
Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
||| | ||| ||||| || || ||||||||||||||||| ||||
Sbjct 409039 AGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622853430872720
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