Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq404 98.7 1e-15 seq1094 84.2 2e-11 >seq404 Length=684826 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || |||||||| |||||| | ||||| | ||| | ||| | Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || || || ||| ||||||||||| || || || |||||| Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || ||||| ||| | ||||| | | | | |||||||||| Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||||||||| | ||| ||||||| Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGTCCT 506787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||||||||| ||||| ||| | |||||| | || | || | Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| || ||| ||||||||||| || || || || ||| Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | |||| || ||||| || || ||||| | ||| | || || || Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||||| | ||| |||| || | ||| | || || Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCGCCTTCGTGGTGG 506574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || |||||| | ||||| | ||| | ||| || | Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || ||| || ||| || |||||||| || || || || ||| Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 ||| | | || | || |||||| ||| | ||||||| | | | ||||| |||| | Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAG--ACTACA 509187 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || ||||||||||| ||||| | ||||| Sbjct 509188 ACATCCAGAAAGAATCTACCCTCCATTTAGTCCT 509221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || ||||| ||| | |||||| ||||| | || | Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| |||||| ||||| ||||| || || || || ||| Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 || | | |||| || |||||| || | ||||||| | | | || ||| |||||| | Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTC--CGACTACA 506981 Query 26947 ACATTCAAAAAGAATCTACTATCCAT 26972 |||| || || || ||||| ||||| Sbjct 506982 ACATCCAGAAGGAGTCTACCCTCCAT 507007 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || || ||||||||||| || | ||||| | || | ||| | Sbjct 506116 CAATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACC 506175 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || ||||| || | || ||| |||||| || |||||||| || ||||| || Sbjct 506176 CTCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGA 506235 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||| | | || | | ||| ||||| || ||||||| | | | | ||| || Sbjct 506236 TCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTA 506295 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || ||||| |||||||| | ||| |||| || Sbjct 506296 TAATATCCAAAAGGAATCTACACTTCATTTGGTTCT 506331 >seq1094 Length=241507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | ||||| || || |||| || ||| | || ||| | || |||| | Sbjct 166284 AAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCT 166225 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| || || | ||||| || || ||||||||||| || || || ||| Sbjct 166224 TCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 166165 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACT 26943 |||||| | | || | | ||||||||| | || |||| | | | | ||||| ||| Sbjct 166164 CAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAG--ACT 166107 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | ||||||||||| || || ||| | ||| |||| || Sbjct 166106 ACAACATTCAAAAGGAGTCGACTTTGCATTTGGTACT 166070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478590349342240