Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq404 98.7 1e-15
seq1094 84.2 2e-11
>seq404
Length=684826
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || |||||||| |||||| | ||||| | ||| | ||| |
Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| || || || | || || || ||| ||||||||||| || || || ||||||
Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | | |||| || ||||| ||| | ||||| | | | | ||||||||||
Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||||||||||||||| | ||| |||||||
Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGTCCT 506787
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | |||||||||||||| ||||| ||| | |||||| | || | || |
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| ||||| || | || ||| || ||| ||||||||||| || || || || |||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | |||| || ||||| || || ||||| | ||| | || || ||
Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||||||||||||||| | ||| |||| || | ||| | || ||
Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCGCCTTCGTGGTGG 506574
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || | || |||||| | ||||| | ||| | ||| || |
Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| || ||||| | || ||| || ||| || |||||||| || || || || |||
Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946
||| | | || | || |||||| ||| | ||||||| | | | ||||| |||| |
Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAG--ACTACA 509187
Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||| || ||||||||||| ||||| | |||||
Sbjct 509188 ACATCCAGAAAGAATCTACCCTCCATTTAGTCCT 509221
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || || ||||| ||| | |||||| ||||| | || |
Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || ||| |||||| ||||| ||||| || || || || |||
Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946
|| | | |||| || |||||| || | ||||||| | | | || ||| |||||| |
Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTC--CGACTACA 506981
Query 26947 ACATTCAAAAAGAATCTACTATCCAT 26972
|||| || || || ||||| |||||
Sbjct 506982 ACATCCAGAAGGAGTCTACCCTCCAT 507007
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824
||| ||||| | || || || ||||||||||| || | ||||| | || | ||| |
Sbjct 506116 CAATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACC 506175
Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
|| ||||| || | || ||| |||||| || |||||||| || ||||| ||
Sbjct 506176 CTCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGA 506235
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
||||||| | | || | | ||| ||||| || ||||||| | | | | ||| ||
Sbjct 506236 TCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTA 506295
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||| || ||||| |||||||| | ||| |||| ||
Sbjct 506296 TAATATCCAAAAGGAATCTACACTTCATTTGGTTCT 506331
>seq1094
Length=241507
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|||||||| | ||||| || || |||| || ||| | || ||| | || |||| |
Sbjct 166284 AAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCT 166225
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||| || || | ||||| || || ||||||||||| || || || |||
Sbjct 166224 TCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 166165
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACT 26943
|||||| | | || | | ||||||||| | || |||| | | | | ||||| |||
Sbjct 166164 CAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAG--ACT 166107
Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| ||||||||||| || || ||| | ||| |||| ||
Sbjct 166106 ACAACATTCAAAAGGAGTCGACTTTGCATTTGGTACT 166070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478590349342240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |