Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1090 185 2e-41 >seq1090 Length=275775 Score = 185 bits (204), Expect = 2e-41 Identities = 569/876 (65%), Gaps = 8/876 (1%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 || |||||| | |||| ||||| ||||| |||||| | |||||||| || | ||||| Sbjct 259799 ATGAATGGTAAGATTGCCGAACGGCCGCAACATATGCTGATGCGTGTGGCCGTAGGTATT 259858 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAA--GCTTCTAAGTGCTCGTGTAT 363547 ||| | ||| | ||| | || |||||||| ||||| | || | | || || | Sbjct 259859 CATGGAGAGGACATAGATTCGGCCATTGAAACTTATAACTGGTTGTCCGAGC--GTTACT 259916 Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607 | || || || |||| ||| ||| ||| | || | |||||| ||||||||| Sbjct 259917 TTACCCATGCATCGCCCACATTGTTTGCTGCAGCCACAAATCGTCCACAATTGTCTTCTT 259976 Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667 | || || | | ||| | |||||| || ||||| || ||| | | | || | | Sbjct 259977 GTTTCCTCTTGACCATGGTTGCCGATTCTATTGAGGGCATTTTTAAGTCTGTGGAGCAGT 260036 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGC 363725 ||||| | |||||||| || || || ||||| ||| || || || |||| || Sbjct 260037 GTGCTATGATTTCCAAATCAGCTGGAGGTATTGGA--ATCAATGTCCATTGCATTCGCGC 260094 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | || ||| |||||| ||| ||| ||||| |||| |||||| | | Sbjct 260095 TAAGGGAACTTCCATAGCCGGCACTAATGGAACCTCCAATGGTTTGGTGCCCATGTTAAG 260154 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || | ||| ||| | ||||| || |||||||| || || || || || || Sbjct 260155 AGTATTCAATAATGTTGCACGCTACGTTGATCAGGGTGGTGGCAAACGTCCTGGTGCATT 260214 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| || || | || ||| ||| | || || ||||||||| | || | || || Sbjct 260215 TGCCATCTACTTGGAACCTTGGCATTCGGACATCTTTGAGTTTTTGGATTTAAAAAAGAA 260274 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 || || ||||| || ||||| | ||||| |||||||| |||||| | | || Sbjct 260275 TACCGGCAAAGAAGAGCATCGTGCCAGAGATCTTTTCTATGCTCTTTGGATACCAGATTT 260334 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 |||||| || ||||| | | ||||||| || | || || ||| ||||||| Sbjct 260335 GTTTATGCGACGTGTGGAAGAAAACGGCGATTGGTCCCTAATGTGTCCTCACAAATGTCC 260394 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085 ||| || || || |||||||| || | || || |||||||| || ||| || Sbjct 260395 AGGACTCCATGAGGTCTGGGGTGAAGAATTTGACAAGCTTTACGAAAAATACGAAAAGGC 260454 Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 || || ||| | || ||| || ||| ||| ||||||||||| || || || || Sbjct 260455 CGGCAAAGCTAACAGAACCATTAAGGCGCAGGCGCTTTGGTTTGCCATTATAGAATCCCA 260514 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205 | || || ||||| ||||| ||| | | || || || || || ||||| || || Sbjct 260515 AGTAGAAACTGGAACTCCCTACATGCTATTTAAGGACTCTTGTAATCGCAAAAGTAATCA 260574 Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGC 364265 || | |||| || ||| | ||||| | || || || || ||||||| | || Sbjct 260575 ACAAAATGTTGGCACCATTAAATGCAGCAATTTGTGCACAGAAATCGTTGAATATTCAGC 260634 Query 364266 TCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301 || || || | || || || ||| | || || || Sbjct 260635 ACCGGATGAAATCGCTGTCTGCAACTTGGCCTCCAT 260670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303152508016844