Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 185 2e-41
>seq1090
Length=275775
Score = 185 bits (204), Expect = 2e-41
Identities = 569/876 (65%), Gaps = 8/876 (1%)
Strand=Plus/Plus
Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489
|| |||||| | |||| ||||| ||||| |||||| | |||||||| || | |||||
Sbjct 259799 ATGAATGGTAAGATTGCCGAACGGCCGCAACATATGCTGATGCGTGTGGCCGTAGGTATT 259858
Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAA--GCTTCTAAGTGCTCGTGTAT 363547
||| | ||| | ||| | || |||||||| ||||| | || | | || || |
Sbjct 259859 CATGGAGAGGACATAGATTCGGCCATTGAAACTTATAACTGGTTGTCCGAGC--GTTACT 259916
Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607
| || || || |||| ||| ||| ||| | || | |||||| |||||||||
Sbjct 259917 TTACCCATGCATCGCCCACATTGTTTGCTGCAGCCACAAATCGTCCACAATTGTCTTCTT 259976
Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667
| || || | | ||| | |||||| || ||||| || ||| | | | || | |
Sbjct 259977 GTTTCCTCTTGACCATGGTTGCCGATTCTATTGAGGGCATTTTTAAGTCTGTGGAGCAGT 260036
Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGC 363725
||||| | |||||||| || || || ||||| ||| || || || |||| ||
Sbjct 260037 GTGCTATGATTTCCAAATCAGCTGGAGGTATTGGA--ATCAATGTCCATTGCATTCGCGC 260094
Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785
|| | || ||| |||||| ||| ||| ||||| |||| |||||| | |
Sbjct 260095 TAAGGGAACTTCCATAGCCGGCACTAATGGAACCTCCAATGGTTTGGTGCCCATGTTAAG 260154
Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845
|| || | ||| ||| | ||||| || |||||||| || || || || || ||
Sbjct 260155 AGTATTCAATAATGTTGCACGCTACGTTGATCAGGGTGGTGGCAAACGTCCTGGTGCATT 260214
Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905
||| || || | || ||| ||| | || || ||||||||| | || | || ||
Sbjct 260215 TGCCATCTACTTGGAACCTTGGCATTCGGACATCTTTGAGTTTTTGGATTTAAAAAAGAA 260274
Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965
|| || ||||| || ||||| | ||||| |||||||| |||||| | | ||
Sbjct 260275 TACCGGCAAAGAAGAGCATCGTGCCAGAGATCTTTTCTATGCTCTTTGGATACCAGATTT 260334
Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025
|||||| || ||||| | | ||||||| || | || || ||| |||||||
Sbjct 260335 GTTTATGCGACGTGTGGAAGAAAACGGCGATTGGTCCCTAATGTGTCCTCACAAATGTCC 260394
Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085
||| || || || |||||||| || | || || |||||||| || ||| ||
Sbjct 260395 AGGACTCCATGAGGTCTGGGGTGAAGAATTTGACAAGCTTTACGAAAAATACGAAAAGGC 260454
Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145
|| || ||| | || ||| || ||| ||| ||||||||||| || || || ||
Sbjct 260455 CGGCAAAGCTAACAGAACCATTAAGGCGCAGGCGCTTTGGTTTGCCATTATAGAATCCCA 260514
Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205
| || || ||||| ||||| ||| | | || || || || || ||||| || ||
Sbjct 260515 AGTAGAAACTGGAACTCCCTACATGCTATTTAAGGACTCTTGTAATCGCAAAAGTAATCA 260574
Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGC 364265
|| | |||| || ||| | ||||| | || || || || ||||||| | ||
Sbjct 260575 ACAAAATGTTGGCACCATTAAATGCAGCAATTTGTGCACAGAAATCGTTGAATATTCAGC 260634
Query 364266 TCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301
|| || || | || || || ||| | || || ||
Sbjct 260635 ACCGGATGAAATCGCTGTCTGCAACTTGGCCTCCAT 260670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303152508016844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |