Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq404 122 7e-23 seq1090 114 1e-20 >seq404 Length=684826 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||||||||| ||||| ||| | || ||| | || || ||| | Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| || ||| ||||||||||| || || || || ||| Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||||| || |||||||| || ||||| | ||| | ||||| || Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||||||||||| | ||||| || || Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATT 506559 Score = 114 bits (126), Expect = 1e-20 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| ||| | || ||| ||||||||||| | Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| |||||||| || || || ||| Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 ||| | |||||| || ||||||||| | |||||| | | | || ||| ||| || | Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTC--CGACTACA 506981 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| || || || ||||| | |||||||| || Sbjct 506982 ACATCCAGAAGGAGTCTACCCTCCATTTAGTTTT 507015 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || |||||||| |||||| | || || | ||||| || | Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || || ||| ||||||||||| || || || |||||| Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168 ||| | |||||| || ||||||||| | ||||| ||| | | ||| ||| |||| Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTC--CGACTATA 506753 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||||||||| | ||||| || Sbjct 506754 ACATTCAAAAAGAATCTACACTACATTTGGT 506784 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || ||||||||||| || | || || | || || || | Sbjct 506116 CAATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACC 506175 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || ||||| || | || ||| |||||| || ||||||||||| ||||| || Sbjct 506176 CTCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGA 506235 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | |||| | | ||| || || || ||||||| | | | | |||||| Sbjct 506236 TCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTA 506295 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || ||||| ||||||||| ||||||| || Sbjct 506296 TAATATCCAAAAGGAATCTACACTTCATTTGGT 506328 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || |||||| | || || | |||||||| | | Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| || ||| || ||||||||||| || || || ||| Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA--ACGTCAGCGATTATA 24168 || | | || | || |||||||||| | ||||||| | | |||| || || | Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCA--GACTACA 509187 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||| || ||||||||||| | |||||||| Sbjct 509188 ACATCCAGAAAGAATCTACCCTCCATTTAGT 509218 >seq1090 Length=275775 Score = 114 bits (126), Expect = 1e-20 Identities = 335/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Minus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 || |||||||| || | ||| ||||| || |||||||| |||||||||||||||||||| Sbjct 261579 ACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTA 261520 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 | ||| | ||| ||||| ||||| || | || | |||| |||| | |||| Sbjct 261519 AGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCC 261460 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043 ||| | ||||| |||||||| || || ||| ||| ||| | || || ||||| || Sbjct 261459 ACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCAT-TTT 261401 Query 132044 AACAATACT-TTCTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGG 132102 || | | || ||||||||| | || ||| ||||| | | || | || Sbjct 261400 AATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTGGG 261341 Query 132103 AATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCAGTTC--T 132160 ||| || ||||| || |||| || || | | |||||||| | ||| ||| Sbjct 261340 AATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTC 261281 Query 132161 GTC---GAGTACACGTTGCAGTCTACGAGTTTATCGACGAGATGTTGATTTACTAT-TTG 132216 || || | ||| | ||| | |||| | | ||| ||||| || || ||| Sbjct 261280 ATCCCATAGGTCGAGTT-CGGTC-AAATCTTTA---AGCAAATGATGATTGACAATGTTG 261226 Query 132217 ATATTCACCCGATAAGACTCTTCGTACGTACAAA--TTACTAGTAAACGGCTCGAACGAT 132274 | |||||||||||| || | ||| ||| ||| || ||| |||| ||||| | | Sbjct 261225 A-ATTCACCCGATAGTACACGGCGT--GTATAAATGTTTGAAGTGTACGGTTCGAAAGCT 261169 Query 132275 TCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAA 132334 || ||||| |||| ||||| || |||| ||||| |||||| ||| | | | ||| Sbjct 261168 TCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAA 261109 Query 132335 TTGCGCAGCCCGTGTATGGCCATT 132358 ||||| | || ||| |||| ||| Sbjct 261108 TTGCGTACACCATGTTTGGCAATT 261085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429872901786510