Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq404 122 7e-23
seq1090 114 1e-20
>seq404
Length=684826
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | |||||||||||||| ||||| ||| | || ||| | || || ||| |
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||| || | || ||| || ||| ||||||||||| || || || || |||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| || |||||| || |||||||| || ||||| | ||| | ||||| ||
Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||||||||||||||||| | ||||| || ||
Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATT 506559
Score = 114 bits (126), Expect = 1e-20
Identities = 156/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || || ||||| ||| | || ||| ||||||||||| |
Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || ||| |||||| ||||| |||||||| || || || |||
Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168
||| | |||||| || ||||||||| | |||||| | | | || ||| ||| || |
Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTC--CGACTACA 506981
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||| || || || ||||| | |||||||| ||
Sbjct 506982 ACATCCAGAAGGAGTCTACCCTCCATTTAGTTTT 507015
Score = 105 bits (116), Expect = 6e-18
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || |||||||| |||||| | || || | ||||| || |
Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || || || | || || || ||| ||||||||||| || || || ||||||
Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGA-AACGTCAGCGATTATA 24168
||| | |||||| || ||||||||| | ||||| ||| | | ||| ||| ||||
Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTC--CGACTATA 506753
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||||||||||||||||| | ||||| ||
Sbjct 506754 ACATTCAAAAAGAATCTACACTACATTTGGT 506784
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | || || || ||||||||||| || | || || | || || || |
Sbjct 506116 CAATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACC 506175
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
| || ||||| || | || ||| |||||| || ||||||||||| ||||| ||
Sbjct 506176 CTCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGA 506235
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
|||||| | |||| | | ||| || || || ||||||| | | | | ||||||
Sbjct 506236 TCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTA 506295
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199
||| || ||||| ||||||||| ||||||| ||
Sbjct 506296 TAATATCCAAAAGGAATCTACACTTCATTTGGT 506328
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || | || |||||| | || || | |||||||| | |
Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || ||||| | || ||| || ||| || ||||||||||| || || || |||
Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA--ACGTCAGCGATTATA 24168
|| | | || | || |||||||||| | ||||||| | | |||| || || |
Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCA--GACTACA 509187
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||| || ||||||||||| | ||||||||
Sbjct 509188 ACATCCAGAAAGAATCTACCCTCCATTTAGT 509218
>seq1090
Length=275775
Score = 114 bits (126), Expect = 1e-20
Identities = 335/504 (66%), Gaps = 18/504 (4%)
Strand=Plus/Minus
Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923
|| |||||||| || | ||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 261579 ACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTA 261520
Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983
| ||| | ||| ||||| ||||| || | || | |||| |||| | ||||
Sbjct 261519 AGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCC 261460
Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043
||| | ||||| |||||||| || || ||| ||| ||| | || || ||||| ||
Sbjct 261459 ACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCAT-TTT 261401
Query 132044 AACAATACT-TTCTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGG 132102
|| | | || ||||||||| | || ||| ||||| | | || | ||
Sbjct 261400 AATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTGGG 261341
Query 132103 AATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCAGTTC--T 132160
||| || ||||| || |||| || || | | |||||||| | ||| |||
Sbjct 261340 AATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTC 261281
Query 132161 GTC---GAGTACACGTTGCAGTCTACGAGTTTATCGACGAGATGTTGATTTACTAT-TTG 132216
|| || | ||| | ||| | |||| | | ||| ||||| || || |||
Sbjct 261280 ATCCCATAGGTCGAGTT-CGGTC-AAATCTTTA---AGCAAATGATGATTGACAATGTTG 261226
Query 132217 ATATTCACCCGATAAGACTCTTCGTACGTACAAA--TTACTAGTAAACGGCTCGAACGAT 132274
| |||||||||||| || | ||| ||| ||| || ||| |||| ||||| | |
Sbjct 261225 A-ATTCACCCGATAGTACACGGCGT--GTATAAATGTTTGAAGTGTACGGTTCGAAAGCT 261169
Query 132275 TCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAA 132334
|| ||||| |||| ||||| || |||| ||||| |||||| ||| | | | |||
Sbjct 261168 TCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAA 261109
Query 132335 TTGCGCAGCCCGTGTATGGCCATT 132358
||||| | || ||| |||| |||
Sbjct 261108 TTGCGTACACCATGTTTGGCAATT 261085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429872901786510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |