Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 143 3e-29
seq1090 136 4e-27
seq404 123 2e-23
seq1431 96.9 3e-15
>seq1094
Length=241507
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || ||||| | ||||||||||||||||||||||| || |
Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| | || ||||| || |||| ||||| || || || || |||
Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||||||||| |||||| ||||| | || | ||| |||| | ||| |
Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| ||||||||||||||| || || || || ||||||||
Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCAT 166281
>seq1090
Length=275775
Score = 136 bits (150), Expect = 4e-27
Identities = 588/913 (64%), Gaps = 25/913 (3%)
Strand=Plus/Minus
Query 145085 ACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATT 145144
||||| || ||| | ||| || ||| | ||||| |||| || || ||||||| |||
Sbjct 261210 ACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATT 261151
Query 145145 TGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTC 145204
|| || |||| || ||||||||| |||| | | |||||||| | || || ||
Sbjct 261150 TGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTG 261091
Query 145205 TTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATG 145264
|| ||||||||| | | |||||||||| || || ||| | || |||||||
Sbjct 261090 GCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATG 261031
Query 145265 TCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAA 145324
|| || || | || || | ||| | ||||| ||| || | | || | |||
Sbjct 261030 TCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAG--GGACCAT 260973
Query 145325 GTTTTG--GCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTT 145382
|| | || | || ||||| || |||| ||| || | ||||| || || ||||
Sbjct 260972 CTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTT 260913
Query 145383 GCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCAT 145442
| || | | || || ||||| ||||| || |||| || | | || ||
Sbjct 260912 GTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTAT 260853
Query 145443 CGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCG 145502
|||| | ||||| | || | ||| ||||| |||||| | | || | || |||
Sbjct 260852 CGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCT 260793
Query 145503 ACTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTT 145561
|| | ||||| | | | || || || ||||| || | || ||| | || || ||
Sbjct 260792 CCTGCAGTGGATAGTAGTTGACA-TCTATGATTTTGTTGAGATTGCGCGCCACGACTTTA 260734
Query 145562 G-TAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATT 145620
| || ||| | ||| || | ||||||||| || | || |||| | | ||
Sbjct 260733 GATACTGT-CTTCAATTTCTTAAAGTCAAA---AGTTTTTTCGGGCGTCACAAACATGTT 260678
Query 145621 GACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTG--TATTGTACG 145678
| | || || ||||| || || || || | || || | || |||| |||| |||
Sbjct 260677 CAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCG-GT-GCTGAATATTCAACG 260620
Query 145679 ATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTG 145738
|| || | |||||||||||| ||||| ||||| || | |||||| ||||||||||| |
Sbjct 260619 ATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGA 260560
Query 145739 TTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT- 145797
|| || | |||||| | |||||||| || ||||| || || || | || | ||
Sbjct 260559 TTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATG 260500
Query 145798 --AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGC--GGCCCTCTTCTTCGT 145853
||| | || ||||||| | | || | ||| |||| ||| | | |||||
Sbjct 260499 GCAAACCAAAGC---GCCTGCGC-CTTA-ATGGTTCTGTTAGCTTTGCCGGCCTTTTCGT 260445
Query 145854 ATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGT 145913
|||| ||| |||| ||||| | ||| || || || || ||||| ||||
Sbjct 260444 ATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGT 260385
Query 145914 TGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCA 145973
|||||||| || ||||| ||||||| | | || || ||||||||||||||| |
Sbjct 260384 GAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTA 260325
Query 145974 CCCACAGCGCGTA 145986
||| || || ||
Sbjct 260324 TCCAAAGAGCATA 260312
>seq404
Length=684826
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| || | |||| || ||||| | || || || |||||||| ||||||||
Sbjct 506575 GCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 506516
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| || ||| ||| || ||||||||||| ||| | || || ||||| ||||| || ||
Sbjct 506515 CAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 506456
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185
||||||||||||||| ||| ||| |||| | | | || | ||||| | | ||| |
Sbjct 506455 GATTCCTTCTTTGTC-TTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAA 506397
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | ||| | ||||||||| || | |||||||| || || ||||||
Sbjct 506396 CCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || ||||||| || || || ||||||||||| || ||| |
Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||| || | |||||||| ||| | || |||||||| || || || ||
Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||||||||| ||||| ||| | | || | |||||| | | || |
Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | || | ||||| || |||| || || ||||| || ||||||
Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575
>seq1431
Length=173026
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| ||||| |||| |||||||| | || || |||||||| |||||||| ||
Sbjct 151321 GCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGA 151262
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| || || || || ||||| || || || | |||||||| || || || || ||
Sbjct 151261 TAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGG 151202
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||||| |||||||| || || ||| | | || | ||||| | | ||| |
Sbjct 151201 AATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAAC 151142
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| ||| || || |||| |||||| || |||||||||||
Sbjct 151141 TTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471941750273280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |