Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1094 143 3e-29 seq1090 136 4e-27 seq404 123 2e-23 seq1431 96.9 3e-15 >seq1094 Length=241507 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | ||||||||||||||||||||||| || | Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | || ||||| || |||| ||||| || || || || ||| Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | ||| |||| | ||| | Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||||||||| || || || || |||||||| Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCAT 166281 >seq1090 Length=275775 Score = 136 bits (150), Expect = 4e-27 Identities = 588/913 (64%), Gaps = 25/913 (3%) Strand=Plus/Minus Query 145085 ACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATT 145144 ||||| || ||| | ||| || ||| | ||||| |||| || || ||||||| ||| Sbjct 261210 ACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATT 261151 Query 145145 TGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTC 145204 || || |||| || ||||||||| |||| | | |||||||| | || || || Sbjct 261150 TGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTG 261091 Query 145205 TTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATG 145264 || ||||||||| | | |||||||||| || || ||| | || ||||||| Sbjct 261090 GCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATG 261031 Query 145265 TCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAA 145324 || || || | || || | ||| | ||||| ||| || | | || | ||| Sbjct 261030 TCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAG--GGACCAT 260973 Query 145325 GTTTTG--GCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTT 145382 || | || | || ||||| || |||| ||| || | ||||| || || |||| Sbjct 260972 CTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTT 260913 Query 145383 GCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCAT 145442 | || | | || || ||||| ||||| || |||| || | | || || Sbjct 260912 GTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTAT 260853 Query 145443 CGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCG 145502 |||| | ||||| | || | ||| ||||| |||||| | | || | || ||| Sbjct 260852 CGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCT 260793 Query 145503 ACTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTT 145561 || | ||||| | | | || || || ||||| || | || ||| | || || || Sbjct 260792 CCTGCAGTGGATAGTAGTTGACA-TCTATGATTTTGTTGAGATTGCGCGCCACGACTTTA 260734 Query 145562 G-TAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATT 145620 | || ||| | ||| || | ||||||||| || | || |||| | | || Sbjct 260733 GATACTGT-CTTCAATTTCTTAAAGTCAAA---AGTTTTTTCGGGCGTCACAAACATGTT 260678 Query 145621 GACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTG--TATTGTACG 145678 | | || || ||||| || || || || | || || | || |||| |||| ||| Sbjct 260677 CAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCG-GT-GCTGAATATTCAACG 260620 Query 145679 ATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTG 145738 || || | |||||||||||| ||||| ||||| || | |||||| ||||||||||| | Sbjct 260619 ATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGA 260560 Query 145739 TTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT- 145797 || || | |||||| | |||||||| || ||||| || || || | || | || Sbjct 260559 TTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATG 260500 Query 145798 --AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGC--GGCCCTCTTCTTCGT 145853 ||| | || ||||||| | | || | ||| |||| ||| | | ||||| Sbjct 260499 GCAAACCAAAGC---GCCTGCGC-CTTA-ATGGTTCTGTTAGCTTTGCCGGCCTTTTCGT 260445 Query 145854 ATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGT 145913 |||| ||| |||| ||||| | ||| || || || || ||||| |||| Sbjct 260444 ATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGT 260385 Query 145914 TGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCA 145973 |||||||| || ||||| ||||||| | | || || ||||||||||||||| | Sbjct 260384 GAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTA 260325 Query 145974 CCCACAGCGCGTA 145986 ||| || || || Sbjct 260324 TCCAAAGAGCATA 260312 >seq404 Length=684826 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||| || ||||| | || || || |||||||| |||||||| Sbjct 506575 GCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 506516 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || ||| ||| || ||||||||||| ||| | || || ||||| ||||| || || Sbjct 506515 CAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 506456 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||||||||| ||| ||| |||| | | | || | ||||| | | ||| | Sbjct 506455 GATTCCTTCTTTGTC-TTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAA 506397 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||||||||| || | |||||||| || || |||||| Sbjct 506396 CCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||||| || || || ||||||||||| || ||| | Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | |||||||| ||| | || |||||||| || || || || Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| ||| | | || | |||||| | | || | Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||||| || |||| || || ||||| || |||||| Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575 >seq1431 Length=173026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| ||||| |||| |||||||| | || || |||||||| |||||||| || Sbjct 151321 GCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGA 151262 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || || || ||||| || || || | |||||||| || || || || || Sbjct 151261 TAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGG 151202 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| |||||||| || || ||| | | || | ||||| | | ||| | Sbjct 151201 AATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAAC 151142 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || |||| |||||| || ||||||||||| Sbjct 151141 TTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471941750273280