Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1094 122 7e-23 seq404 84.2 2e-11 >seq1094 Length=241507 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||||| || ||||||||||| ||||||||||| | || ||| | ||| Sbjct 166070 AGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCC 166129 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||||||||| ||| | || | || ||||| || || | || |||||||| Sbjct 166130 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 166189 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | ||||||| ||||| |||| ||| |||||| Sbjct 166190 TGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTT 166249 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || ||||| || || |||||||| ||||||||||| Sbjct 166250 TTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284 >seq404 Length=684826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || || | ||| || || |||||||| || ||||||||||||| | Sbjct 507030 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 506971 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || ||||| || ||||| || |||| | ||||||||||| || Sbjct 506970 AGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGA 506911 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | ||||| ||||| Sbjct 506910 ATGCCTTCCTTGTCTTGAATCTTGGCT--TTCACGTTTTCGATGGTGTCCGAAGGCTCGA 506853 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||| || |||| || ||||| || || ||||| Sbjct 506852 CTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405028548525580