Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq404 131 1e-25
seq11 131 1e-25
seq1431 122 6e-23
seq1094 122 6e-23
seq1810 98.7 7e-16
>seq404
Length=684826
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | |||||||| || || || |||||||| || || || |
Sbjct 506804 TACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGG 506745
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| |||| |||| || ||||| || || || || || | || |||||||| | ||
Sbjct 506744 ACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGG 506685
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||||||||| |||||| ||| ||||| | | |||||| | |||||
Sbjct 506684 GAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAA 506625
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||| | ||| |||||||| ||||| || || || |||||||| ||||||
Sbjct 506624 CTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575
Score = 122 bits (134), Expect = 6e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | || ||||| || || || || || || ||||| || |
Sbjct 509238 TACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTG 509179
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||||| || | || || ||||| || ||||| || |||| ||||||||| || | ||
Sbjct 509178 ACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGG 509119
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||||||| || |||||| |||||||| | || |||||| ||| |
Sbjct 509118 GAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGA 509059
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||||||||| || ||||| || |||| ||| || ||||| || ||||||
Sbjct 509058 CTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCATG 509009
Score = 113 bits (124), Expect = 3e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||||||||| || |||||||| ||||| ||||| |||
Sbjct 506346 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGAC 506287
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| |||| | || || | ||||| |||||||| || | ||||||||||| | ||
Sbjct 506286 AAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 506227
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||||||| || ||| || || ||||| | | ||||| ||||||
Sbjct 506226 ATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACC 506167
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||| || || || || || || || |||||||| |||||||| ||
Sbjct 506166 TCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117
Score = 102 bits (112), Expect = 5e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
||||| |||||||| | || || ||||||||||||||||||||||| || ||
Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCG 506503
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || | || ||||| || | |||| |||||||||
Sbjct 506502 TCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTG 506443
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
|| |||||| || ||||| | | ||||| | ||||| || || || ||
Sbjct 506442 TCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATG 506383
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||||||| ||||| ||||| || || || ||||||
Sbjct 506382 GTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
>seq11
Length=2084484
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| ||| | || || || || ||||| ||||| ||||| ||||| ||||||||
Sbjct 1814054 ATGGGTACCGTCAATGTCAACCGCAATGTCACGGACATTTTCTATCGCTATAAAATGCCT 1814113
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
| || || || || || || || ||||| |||||||||||||| |||||||| |||
Sbjct 1814114 AGGATTCAGGCTAAAGTTGAAGGCAAAGGAAATGGTATTAAAACCGTTATTGTCAATATG 1814173
Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341
|||| || || | ||| | || | || |||||||| || || || ||||| || ||
Sbjct 1814174 GCTGATGTGGCCAGGGCCATTGGCAGACCGGCCACCTATCCAACCAAGTATTTTGGATGT 1814233
Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
||||| || || || || || |||||||| ||
Sbjct 1814234 GAACTAGGAGCCCAAACTCAATTTGATCATAA 1814265
>seq1431
Length=173026
Score = 122 bits (134), Expect = 6e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||| ||||| || |||||||| || |||||||| || ||||| || ||
Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGAT 151261
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| ||| | || || | ||||||||||||||||||| ||||||||||| | ||
Sbjct 151260 AACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGA 151201
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || ||||||||| ||| || ||| ||||| | | ||||| ||||||
Sbjct 151200 ATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACT 151141
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | ||||| || || ||||| || ||||| || || |||||||| ||
Sbjct 151140 TCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091
>seq1094
Length=241507
Score = 122 bits (134), Expect = 6e-23
Identities = 171/239 (72%), Gaps = 1/239 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | |||||||| | ||| |||||||||||| ||||| || |
Sbjct 166053 TACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTG 166112
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| || | || || |||||||| || ||||| || | ||||||||||| | |
Sbjct 166113 ACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 166172
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||||||||| ||||| ||| ||||| | | ||| || | || |
Sbjct 166173 GGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTA 166232
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT-TACAA 38326
| || || ||||| |||||||| || | ||| || || || |||||||| ||| |||||
Sbjct 166233 CCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTTCTACAA 166291
>seq1810
Length=135711
Score = 98.7 bits (108), Expect = 7e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004
|||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 50678 TTCTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTAACTATCGGTCTC 50737
Query 20005 GCGGTAATATTTAG 20018
|| ||||||||
Sbjct 50738 ATTGTTATATTTAG 50751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334898042520902
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |