Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq404 131 1e-25 seq11 131 1e-25 seq1431 122 6e-23 seq1094 122 6e-23 seq1810 98.7 7e-16 >seq404 Length=684826 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| || || || |||||||| || || || | Sbjct 506804 TACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGG 506745 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| |||| |||| || ||||| || || || || || | || |||||||| | || Sbjct 506744 ACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGG 506685 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| |||||| ||| ||||| | | |||||| | ||||| Sbjct 506684 GAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAA 506625 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| | ||| |||||||| ||||| || || || |||||||| |||||| Sbjct 506624 CTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || ||||| || || || || || || ||||| || | Sbjct 509238 TACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTG 509179 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || | || || ||||| || ||||| || |||| ||||||||| || | || Sbjct 509178 ACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGG 509119 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||| || |||||| |||||||| | || |||||| ||| | Sbjct 509118 GAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGA 509059 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||||| || ||||| || |||| ||| || ||||| || |||||| Sbjct 509058 CTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCATG 509009 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||||| || |||||||| ||||| ||||| ||| Sbjct 506346 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGAC 506287 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || |||| | || || | ||||| |||||||| || | ||||||||||| | || Sbjct 506286 AAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 506227 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| || ||| || || ||||| | | ||||| |||||| Sbjct 506226 ATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACC 506167 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| || || || || || || || |||||||| |||||||| || Sbjct 506166 TCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| |||||||| | || || ||||||||||||||||||||||| || || Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCG 506503 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || || || || || || | || ||||| || | |||| ||||||||| Sbjct 506502 TCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTG 506443 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || |||||| || ||||| | | ||||| | ||||| || || || || Sbjct 506442 TCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATG 506383 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| ||||| ||||| || || || |||||| Sbjct 506382 GTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 >seq11 Length=2084484 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| ||| | || || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 1814054 ATGGGTACCGTCAATGTCAACCGCAATGTCACGGACATTTTCTATCGCTATAAAATGCCT 1814113 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 | || || || || || || || ||||| |||||||||||||| |||||||| ||| Sbjct 1814114 AGGATTCAGGCTAAAGTTGAAGGCAAAGGAAATGGTATTAAAACCGTTATTGTCAATATG 1814173 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 |||| || || | ||| | || | || |||||||| || || || ||||| || || Sbjct 1814174 GCTGATGTGGCCAGGGCCATTGGCAGACCGGCCACCTATCCAACCAAGTATTTTGGATGT 1814233 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| || || || || || |||||||| || Sbjct 1814234 GAACTAGGAGCCCAAACTCAATTTGATCATAA 1814265 >seq1431 Length=173026 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||| ||||| || |||||||| || |||||||| || ||||| || || Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGAT 151261 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || | ||||||||||||||||||| ||||||||||| | || Sbjct 151260 AACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGA 151201 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || ||| ||||| | | ||||| |||||| Sbjct 151200 ATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACT 151141 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || || ||||| || ||||| || || |||||||| || Sbjct 151140 TCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 >seq1094 Length=241507 Score = 122 bits (134), Expect = 6e-23 Identities = 171/239 (72%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | ||| |||||||||||| ||||| || | Sbjct 166053 TACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTG 166112 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || |||||||| || ||||| || | ||||||||||| | | Sbjct 166113 ACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 166172 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| ||| ||||| | | ||| || | || | Sbjct 166173 GGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTA 166232 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT-TACAA 38326 | || || ||||| |||||||| || | ||| || || || |||||||| ||| ||||| Sbjct 166233 CCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTTCTACAA 166291 >seq1810 Length=135711 Score = 98.7 bits (108), Expect = 7e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 50678 TTCTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTAACTATCGGTCTC 50737 Query 20005 GCGGTAATATTTAG 20018 || |||||||| Sbjct 50738 ATTGTTATATTTAG 50751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334898042520902