Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1090 466 2e-126 seq305 251 9e-62 >seq1090 Length=275775 Score = 466 bits (516), Expect = 2e-126 Identities = 1502/2295 (65%), Gaps = 86/2295 (4%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || | | || || ||||| || | | ||| ||||| ||||| || || Sbjct 261576 GTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGG 261517 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || |||| || ||||| || || | |||| || | || || || | | Sbjct 261516 CCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACA 261457 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||||||||||| || ||||| ||||| | || ||||||||||| || Sbjct 261456 TGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG 261397 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 62088 | ||||| | ||||||||| | ||||| || | ||| | || | |||| |||| Sbjct 261396 GTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT-TCTTTGGGAAT 261338 Query 62089 GT--TTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 | | | | || || ||||| |||| | ||||| |||| || || || |||| Sbjct 261337 TTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATC 261278 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||||| | ||||| ||| || |||| | ||| |||| || | | ||||| || Sbjct 261277 CCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACC 261218 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 || | ||| | || || ||||| || || |||||||| | || ||||| || || Sbjct 261217 CGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCC 261158 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 || |||||| ||||| || || || ||||| || |||| | | ||| | | ||| Sbjct 261157 CATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACC 261098 Query 62326 GTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62383 ||||| | ||| | || ||||| | |||||| ||| ||||| | || || Sbjct 261097 --ATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTG 261040 Query 62384 NNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATC 62439 ||| || ||||| || ||||| | |||| ||| || || Sbjct 261039 TTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT----TCCTGGATACGTTTC 260984 Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499 || || || || | ||||| | ||||||||| || || || ||||| || ||||| || Sbjct 260983 ATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGT 260924 Query 62500 TTCGAAGATCTTCTTATTTAGATCTTGC--GCTTCCAGGCTATCAAATGGATAATTTAAG 62557 ||| || || | | ||| | || ||| || ||| ||| || | |||||| | | Sbjct 260923 TTCAAATATTTGTTGATTCA-AT-TTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATG 260866 Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 ||||| | | || || || || || |||||||| || || || | |||||| |||| Sbjct 260865 AGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTA 260806 Query 62618 GAGATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 || |||| | || ||| | | ||||| || || | |||||| ||||| |||||||| | Sbjct 260805 GAT-TTTCTGGCCTCCTGCAGT-GGATAGTAGTTGACATCTATGATTTTGTTGAGATTGC 260748 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCT 62728 | | ||||| || ||||| ||| ||| ||||| ||| | || Sbjct 260747 GCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC- 260689 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 ||||||||||||| || || |||| || || || || | |||| | | Sbjct 260688 ---ACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCT 260632 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | ||||| | || || ||||| | ||| || || || ||||| || | |||||||||| Sbjct 260631 GAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGA 260572 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 ||||| || ||||| | |||||| | || ||| | ||||| |||||||| | || Sbjct 260571 TTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGG 260512 Query 62909 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC 62967 ||||||||||| || ||| | || || | ||||| || | | ||| | |||| | Sbjct 260511 GATTCTATAATGGCAAACCAAAGCGCCT-GCGCCTTAATGGT---TCTGT-TAGCTTTGC 260457 Query 62968 TC----TTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 |||||||| | || || | | || || || || ||||| || | | ||| Sbjct 260456 CGGCCTTTTCGTATTTTTCGTA-AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGT 260398 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || ||||||| | |||||||| | ||||| || |||| || | ||| ||| |||| Sbjct 260397 CCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATA 260338 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 || | ||| || ||||||||||| ||| || |||||||||| | ||| || || || || Sbjct 260337 AACAAATCTGGTATCCAAAGAGC-ATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCC 260279 Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201 ||||||||||| | ||| | ||| | | || || |||||||| ||||||||||| || Sbjct 260278 GGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGAT 260219 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 ||| | | ||||| |||||| || |||||||| | ||| | || ||||| | Sbjct 260218 GGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAA 260159 Query 63262 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 ||||| ||||| || | | ||||||||| || ||||| || || | || | |||| Sbjct 260158 TACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCC 260099 Query 63322 ACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 | || ||||| | | |||||| || || || || || ||| || || | Sbjct 260098 CTTAGCGCGAATGCAATGGACATTGAT--TCCAATACCTCCAGCTGATTTGGAAATCATA 260041 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || | | | | | | | |||||||| ||| ||| | | |||| | | || Sbjct 260040 GCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGG 259981 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 ||||| ||||| ||| ||||| | || | ||| ||| || || || || || || Sbjct 259980 AAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGG 259921 Query 63500 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63558 ||||| | || || || || || || || ||||| || || ||||| ||| | Sbjct 259920 GTAAAGTAACGCTCGGACAACCAG-TTATAAGTTTCAATGGCCGAATCTATGTCCTCTCC 259862 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 |||||| ||||| || |||||||| | ||| || || || | ||| | ||||| || Sbjct 259861 ATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATT 259802 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 |||||||| | || || ||| | ||| ||||| ||||| |||||||| ||| || Sbjct 259801 CATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATC 259742 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 63738 || ||||| | ||| |||||||||| ||| || ||| | || ||| | Sbjct 259741 ACGGTCGTATACAATGGCCGAGTTGAGGCGCTCCGAATTTTTCATGACCACA-------T 259689 Query 63739 AATACTTGAAATAATAGGAA---AATGTTTCCCATT-TTTAGGATTGACATAGTTGAATA 63794 ||| |||| ||| |||| | || | ||| || | || | | || ||| | Sbjct 259688 TATA-ATGAA--AATCGGAAATCATTGATGCCCTTTGTCCAGTCTCGTCA---CTGACGA 259635 Query 63795 AATCCTCCA--TCACT--TCACT-----AAATAGtttttttGTTTCTTTGTGTAGATTTG 63845 ||| | || ||||| | ||| || | ||||| ||||||||||| | || | Sbjct 259634 AATGATGCAGGTCACTGATGACTTCCGAGAAAACCTTTTTAGTTTCTTTGTGCAAGTTGG 259575 Query 63846 ATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTG 63905 | || || || | ||| || | | |||||||| | ||| | ||| || ||||| | Sbjct 259574 ACACAGCAATGCGAGCCGCCAACAAAGCATAATCGGCATGATTTGTTGTGAGTGTGGCAG 259515 Query 63906 CTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGA 63965 || |||| || |||| | ||||||||| | ||||| || || ||| | || | || Sbjct 259514 CTGTTTCTGCGGCCAAATTGTCCAATTGTTGAGTTGTGACGCCGCAATACAAACCATTGA 259455 Query 63966 TAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATT 64025 | ||| | | | ||| | ||||| | || |||| | |||||| || || | Sbjct 259454 TTACCCTTAAGGTTATGGCCACTGGATCGACGAAGTCCATGTTGAGGCCATAGCA-AAGT 259396 Query 64026 TTCT-AATACGAGATGTGATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTT 64083 |||| || || || || || ||||| || ||| || | || ||| |||| ||||| Sbjct 259395 TTCTGGATGCGTGAAGTAATCTTATCGAA-ATGTACTTCCTCTTTGCGGCCATCACGTTT 259337 Query 64084 AATGACAAACATTTT 64098 | ||||| | ||| Sbjct 259336 GACCACAAAAAGTTT 259322 >seq305 Length=710094 Score = 251 bits (278), Expect = 9e-62 Identities = 485/707 (69%), Gaps = 15/707 (2%) Strand=Plus/Plus Query 32495 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 32554 |||||| |||||||| ||||| ||| | ||||||||||| || || | || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 32555 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 32614 ||| | || | ||||| ||||| ||||| || ||||| ||| |||| || || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTAT----CT 408497 Query 32615 TACTGTTTC-TTCACTCGGTGGA----TACAATAAATGTTTAAACATCAA-ACATGCGAA 32668 | || | | ||| || | ||| | || | || ||||||||||| ||| || || Sbjct 408498 CAATGATACGTTCTCT-GCTGGGCTTCTGCACCAGATACTTAAACATCAATACA-GCAAA 408555 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 ||| || || | ||| ||||| | || | |||||||| || || | |||||||| Sbjct 408556 ATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCAT 408615 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 ||||||||| || || | ||| || ||||| ||||| || ||||| || ||||| Sbjct 408616 TAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTC 408675 Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC--ATG-TATCCACTT 32845 || || ||||| || || | | || ||| || || || ||| |||||| Sbjct 408676 AACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGA 408735 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||||||| || || |||| ||| ||||| || || || ||||| || | ||| Sbjct 408736 CAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATA 408795 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 | || | || |||||||| ||| || ||||| | || || ||||||||||| || Sbjct 408796 TTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTG 408855 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 || || || || || || || || || |||||||| | || || || | || || || Sbjct 408856 AACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTC 408915 Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | | |||||| || | | ||| ||||| ||||| || || ||| ||||| || || Sbjct 408916 TTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGC 408975 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 ||| ||||| || |||||| |||| | ||| ||||| | ||| ||| ||||| Sbjct 408976 CAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATC 409035 Query 33146 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 |||||| | ||||||||| || || ||||||||||||||||| |||| Sbjct 409036 TTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633536622543200