Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq404 143 2e-29 seq1094 131 1e-25 seq1431 120 3e-22 >seq404 Length=684826 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| || || || ||| | |||||| | ||||| || | ||| Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | || || |||| ||| ||||||||||| ||||| || || || Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCA-AGACAAAGAAGGTATTCCCCCAGATCA 506694 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || ||||| ||||| ||||| | || || || ||| || || Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAA 506754 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || |||||||| || ||| | ||| | || || Sbjct 506755 CATTCAAAAAGAATCTACACTACATTTGGTCCTACGTCTACGTGGTGG 506802 Score = 141 bits (156), Expect = 8e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || ||| ||||||| ||||||| ||| | || Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| || || | ||| ||||| ||||| ||||| || ||||| Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAA-GACAAGGAAGGCATTCCCCCAGACCA 506922 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| |||||||| || || ||||||| ||| || || ||| ||||| Sbjct 506923 ACAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAA 506982 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || || || || || |||||||| Sbjct 506983 CATCCAGAAGGAGTCTACCCTCCATTTAGT 507012 Score = 140 bits (154), Expect = 3e-28 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || ||||| |||||| ||||||| | || || ||| | ||| Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| ||| ||||||||||| || ||||| ||| Sbjct 506408 GATACCATTGAA--AATGTTAAAGCCAAAATTCAA-GACAAAGAAGGAATCCCACCAGAC 506464 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||| || ||||| || | ||||| | || || || |||||| Sbjct 506465 CAACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTAC 506524 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||| || | ||||| || Sbjct 506525 AATATTCAAAAAGAATCTACATTGCATTTGGT 506556 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | || || | |||||||| | ||| Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| | || |||| ||| || |||||||| ||||| || || Sbjct 509298 GATACCATAGAAAATGTCA---AGGCCAAAATTCA-AGATAAAGAAGGCATTCCCCCAGA 509353 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || |||||||||||||| || ||||||| |||||| || || || Sbjct 509354 TCAGCAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTA 509413 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || || ||||| ||||| Sbjct 509414 CAACATCCAGAAGGAATCAACACTCCATTTGGTGCT 509449 >seq1094 Length=241507 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||||| || ||||| ||||| | ||||||||| |||| || | || || ||| Sbjct 166286 GAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGC 166227 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | || |||||||| || | ||| |||||| ||||||||||| || ||||| | Sbjct 166226 CTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAG 166167 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | || ||||| ||||||||||| || |||| |||||| || || | Sbjct 166166 ATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACT 166107 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||||| || || || | ||||| || || Sbjct 166106 ACAACATTCAAAAGGAGTCGACTTTGCATTTGGTACT 166070 >seq1431 Length=173026 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||||| || || || |||| || | ||||| ||| ||||| Sbjct 151094 ATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCGTCT 151153 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | || | ||| |||||||| || ||||||||||| || Sbjct 151154 GATACAATAGAAAATGTAAAGGCCAAGATTCAG-GACAAAGAGGGAATTCCACCTGATCA 151212 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| ||||| | ||||||| ||| || | || ||||| Sbjct 151213 ACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTACAA 151272 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| ||||| ||||| |||||||| Sbjct 151273 CATACAAAAGGAATCAACGCTTCATTTAGT 151302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433264403970230