Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq404 143 2e-29
seq1094 131 1e-25
seq1431 120 3e-22
>seq404
Length=684826
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| || ||||| || || || ||| | |||||| | ||||| || | |||
Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || | || || |||| ||| ||||||||||| ||||| || || ||
Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCA-AGACAAAGAAGGTATTCCCCCAGATCA 506694
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | ||||| || ||||| ||||| ||||| | || || || ||| || ||
Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAA 506754
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||||||| || |||||||| || ||| | ||| | || ||
Sbjct 506755 CATTCAAAAAGAATCTACACTACATTTGGTCCTACGTCTACGTGGTGG 506802
Score = 141 bits (156), Expect = 8e-29
Identities = 159/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||| || ||| ||||||| ||||||| ||| | ||
Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| |||| || || | ||| ||||| ||||| ||||| || |||||
Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAA-GACAAGGAAGGCATTCCCCCAGACCA 506922
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | ||||| |||||||| || || ||||||| ||| || || ||| |||||
Sbjct 506923 ACAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAA 506982
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| || || || || || || ||||||||
Sbjct 506983 CATCCAGAAGGAGTCTACCCTCCATTTAGT 507012
Score = 140 bits (154), Expect = 3e-28
Identities = 160/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| |||||||| || ||||| |||||| ||||||| | || || ||| | |||
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || | || |||| |||| ||| ||||||||||| || ||||| |||
Sbjct 506408 GATACCATTGAA--AATGTTAAAGCCAAAATTCAA-GACAAAGAAGGAATCCCACCAGAC 506464
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | ||||| || ||||| || | ||||| | || || || ||||||
Sbjct 506465 CAACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTAC 506524
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||||||||||||||||| || | ||||| ||
Sbjct 506525 AATATTCAAAAAGAATCTACATTGCATTTGGT 506556
Score = 122 bits (134), Expect = 8e-23
Identities = 158/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||||||||| || || | || || | |||||||| | |||
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || |||| | || |||| ||| || |||||||| ||||| || ||
Sbjct 509298 GATACCATAGAAAATGTCA---AGGCCAAAATTCA-AGATAAAGAAGGCATTCCCCCAGA 509353
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| || || | || |||||||||||||| || ||||||| |||||| || || ||
Sbjct 509354 TCAGCAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTA 509413
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || ||||| || || ||||| |||||
Sbjct 509414 CAACATCCAGAAGGAATCAACACTCCATTTGGTGCT 509449
>seq1094
Length=241507
Score = 131 bits (144), Expect = 1e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053
||| |||||| || ||||| ||||| | ||||||||| |||| || | || || |||
Sbjct 166286 GAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGC 166227
Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
| || |||||||| || | ||| |||||| ||||||||||| || ||||| |
Sbjct 166226 CTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAG 166167
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| ||||| || | || ||||| ||||||||||| || |||| |||||| || || |
Sbjct 166166 ATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACT 166107
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| |||||||| || || || | ||||| || ||
Sbjct 166106 ACAACATTCAAAAGGAGTCGACTTTGCATTTGGTACT 166070
>seq1431
Length=173026
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || ||||| || || || |||| || | ||||| ||| |||||
Sbjct 151094 ATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCGTCT 151153
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || | ||| | || | ||| |||||||| || ||||||||||| ||
Sbjct 151154 GATACAATAGAAAATGTAAAGGCCAAGATTCAG-GACAAAGAGGGAATTCCACCTGATCA 151212
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || |||||||| ||||| | ||||||| ||| || | || |||||
Sbjct 151213 ACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTACAA 151272
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| ||||| ||||| ||||| ||||||||
Sbjct 151273 CATACAAAAGGAATCAACGCTTCATTTAGT 151302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433264403970230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |