Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq305 349 4e-91
seq546 129 7e-25
seq204 129 7e-25
>seq305
Length=710094
Score = 349 bits (386), Expect = 4e-91
Identities = 505/705 (72%), Gaps = 12/705 (2%)
Strand=Plus/Plus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
||| ||||||||||| || |||| ||||| |||||||||||||| || | | | | |
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAAT-TGC 408440
Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044
| || | || || || | ||| || | |||||| ||| |||||| | | || || |
Sbjct 408441 ATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAA 408500
Query 93045 TTACTCTAC--TATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACGCAAAGT 93101
| | ||| | | || ||| || || || | ||| || |||| || ||||| |
Sbjct 408501 TGA---TACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACAGCAAAAT 408557
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
| ||| ||||||||||| || ||||||| ||| ||| ||||||||| || || | |
Sbjct 408558 CACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTA 408617
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221
| || |||||||| | ||| || || || |||||||| || || ||||| ||||| |
Sbjct 408618 GGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAA 408677
Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT--CCATTT 93279
| || ||||| || | | |||||| ||||||| || |||| | | |||| ||||
Sbjct 408678 CAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAAT--CCGATGATATCCATGA 408735
Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339
||||||||||| |||||| | |||| | || | ||||| || || || |||| ||
Sbjct 408736 CAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATA 408795
Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
|| || | ||| |||| || || || || || | | |||||||| || ||
Sbjct 408796 TTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTG 408855
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
||||||||||| ||||| ||||| || ||||| || | ||||| || | ||||| ||
Sbjct 408856 AACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTC 408915
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
||||||||||||||| || ||||| ||||| ||||| |||||||| || ||||| |||||
Sbjct 408916 TTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGC 408975
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579
||| | ||| || |||| | | |||| ||| | || || ||||| || || | |||
Sbjct 408976 CAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATC 409035
Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
||| || ||||| ||||| || ||||||||||| ||||| || ||
Sbjct 409036 TTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGC 409080
>seq546
Length=455237
Score = 129 bits (142), Expect = 7e-25
Identities = 82/88 (93%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321
||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct 222535 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 222476
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349
||||||||||||||||||||||||||||
Sbjct 222475 CGTGGGTTCGAACCCCACACCTGACAAA 222448
Score = 125 bits (138), Expect = 8e-24
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 208506 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 208447
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||
Sbjct 208446 GTGGGTTCGAACCCCACACCTGACAA 208421
Score = 122 bits (134), Expect = 1e-22
Identities = 78/84 (93%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct 360452 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 360511
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||||||||||
Sbjct 360512 TGGGTTCGAACCCCACACCTGACA 360535
Score = 120 bits (132), Expect = 3e-22
Identities = 78/85 (92%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 218480 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 218421
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||||||||||||| ||||||
Sbjct 218420 GTGGGTTCGAACCCCACATCTGACA 218396
>seq204
Length=977407
Score = 129 bits (142), Expect = 7e-25
Identities = 86/95 (91%), Gaps = 2/95 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 341380 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 341321
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||||||||||||||||||| || || ||
Sbjct 341320 GTGGGTTCGAACCCCACACCTGACAATTTCTTTTT 341286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556776978528080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |