Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq305 349 4e-91 seq546 129 7e-25 seq204 129 7e-25 >seq305 Length=710094 Score = 349 bits (386), Expect = 4e-91 Identities = 505/705 (72%), Gaps = 12/705 (2%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| ||||||||||| || |||| ||||| |||||||||||||| || | | | | | Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAAT-TGC 408440 Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || | || || || | ||| || | |||||| ||| |||||| | | || || | Sbjct 408441 ATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAA 408500 Query 93045 TTACTCTAC--TATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 | | ||| | | || ||| || || || | ||| || |||| || ||||| | Sbjct 408501 TGA---TACGTTCTCTGCTGGGCTTCTGCACCAGATACTTAAACATCAATACAGCAAAAT 408557 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 | ||| ||||||||||| || ||||||| ||| ||| ||||||||| || || | | Sbjct 408558 CACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTA 408617 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | || |||||||| | ||| || || || |||||||| || || ||||| ||||| | Sbjct 408618 GGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAA 408677 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT--CCATTT 93279 | || ||||| || | | |||||| ||||||| || |||| | | |||| |||| Sbjct 408678 CAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAAT--CCGATGATATCCATGA 408735 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 ||||||||||| |||||| | |||| | || | ||||| || || || |||| || Sbjct 408736 CAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATA 408795 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || || | ||| |||| || || || || || | | |||||||| || || Sbjct 408796 TTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTG 408855 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 ||||||||||| ||||| ||||| || ||||| || | ||||| || | ||||| || Sbjct 408856 AACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTC 408915 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||||||||||||||| || ||||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 408916 TTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGC 408975 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 ||| | ||| || |||| | | |||| ||| | || || ||||| || || | ||| Sbjct 408976 CAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATC 409035 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| || ||||| ||||| || ||||||||||| ||||| || || Sbjct 409036 TTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGC 409080 >seq546 Length=455237 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 222535 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 222476 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||||| Sbjct 222475 CGTGGGTTCGAACCCCACACCTGACAAA 222448 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 208506 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 208447 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 208446 GTGGGTTCGAACCCCACACCTGACAA 208421 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 360452 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 360511 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 360512 TGGGTTCGAACCCCACACCTGACA 360535 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 218480 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 218421 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||| |||||| Sbjct 218420 GTGGGTTCGAACCCCACATCTGACA 218396 >seq204 Length=977407 Score = 129 bits (142), Expect = 7e-25 Identities = 86/95 (91%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 341380 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 341321 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||||||| || || || Sbjct 341320 GTGGGTTCGAACCCCACACCTGACAATTTCTTTTT 341286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556776978528080