Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq540 113 9e-20 seq389 98.7 2e-15 seq183 95.1 2e-14 seq431 91.5 3e-13 seq196 91.5 3e-13 seq109 91.5 3e-13 seq1351 89.7 1e-12 seq545 89.7 1e-12 >seq540 Length=484570 Score = 113 bits (124), Expect = 9e-20 Identities = 295/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625 ||||| ||||| | |||| |||||| ||||||| || |||||| | | ||| || Sbjct 96018 CGTTCCATTCCTTGTTTGGTAGATGGCTTCAAGCCTGGCCAACGTAAGGTGATGTTTACC 95959 Query 218626 GCATTCAAGCGGAACCTGGTTCAAG----AAATTAAGGTCGCTCAGTTTTCTGGTTATGT 218681 |||||||| || || |||| | | ||||| || || | ||||||| || Sbjct 95958 TGCTTCAAGCGTAA--TGA--CAAGCGTGAGGTGAAGGTAGCCCAACTCTCTGGTTCCGT 95903 Query 218682 ATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGC 218739 ||| ||||| || | ||||||||||||||| || || |||| | ||||| Sbjct 95902 ATCTGAAATGTCCGCCTACCATCACGGTGA--AGTTTCACTGCAAATGACAATTGTTAAT 95845 Query 218740 ATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTT 218799 |||| || ||||||||||| ||||| || ||| ||||| |||| |||||||| Sbjct 95844 TTGGCCCAAAACTATGTGGGCTCGAACAATATCAACCTGCTGGAGCCCAGAGGTCAGTTC 95785 Query 218800 GGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTG 218859 ||| || | | ||||| |||||| | ||| ||| | || |||||||||| || Sbjct 95784 GGTACTAGGTTGACTGGTGGCAAGGATTGCGCTAGTGCTCGTTACATCTTTACAATTATG 95725 Query 218860 TCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAG 218919 || || || | || | | || ||| | |||||| | | |||| | Sbjct 95724 TCTCCTTTGGCCCGTATGATTTTTCATCCCTCGGATGATCCCTTGTTGCAGTACGAAGTC 95665 Query 218920 GACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979 || |||||| ||||| || | |||||| |||| |||||| | | | ||| Sbjct 95664 GATGATGGTCAAAAAATTGAACCAGTTTGGTATATGCCAATTATTCCTATGGTCTTGGTA 95605 Query 218980 AATGGTGCCAATGGTATCGGGACAGG 219005 ||||| ||| |||||||||| ||||| Sbjct 95604 AATGGAGCCGATGGTATCGGTACAGG 95579 >seq389 Length=585855 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 142489 CCGGGTGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTG 142548 || |||| ||| || |||||| |||||||||||||||||| ||||||||||||| | Sbjct 358403 CCCGGTGTTGAAATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG 358462 Query 142549 GTCGTGGGTTCGAGCCCCACATCGGGC 142575 |||||||||||||||||||| | |||| Sbjct 358463 GTCGTGGGTTCGAGCCCCACGTTGGGC 358489 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 371758 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 371699 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| ||||| Sbjct 371698 CCCACGTTGGGC-GAAGT 371682 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 377439 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 377380 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| ||||| Sbjct 377379 CCCACGTTGGGC-GAAGT 377363 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 360042 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 360101 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 360102 CCCACGTTGGGC 360113 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 363113 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 363054 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 363053 CCCACGTTGGGC 363042 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 370982 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 370923 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 370922 CCCACGTTGGGC 370911 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 374374 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 374315 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 374314 CCCACGTTGGGC 374303 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||| | Sbjct 368147 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAAC 368088 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 368087 CCCACGTTGGGC 368076 >seq183 Length=1007184 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| |||| ||||||||||||||||||||||||||| |||||||||| Sbjct 291214 TGTCCCTTTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 291155 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 291154 CCCCGCAAGGGA 291143 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 |||||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||| Sbjct 291877 CATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCG 291818 Query 142110 ACCCCCGCCAGAGA 142123 | |||||| || || Sbjct 291817 ATCCCCGCAAGGGA 291804 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 285984 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 285925 Query 142112 CCCCGCCAGAGACGC 142126 |||||| || || || Sbjct 285924 CCCCGCAAGGGATGC 285910 >seq431 Length=567316 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 113164 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 113223 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| |||| Sbjct 113224 CCCACGTTGGGCGCAAGT 113241 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 99948 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 100007 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 100008 CCCACGTTGGGC 100019 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 106948 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 106889 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 106888 CCCACGTTGGGC 106877 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 112242 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 112183 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 112182 CCCACGTTGGGC 112171 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 112457 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 112516 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 112517 CCCACGTTGGGC 112528 >seq196 Length=942190 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 924962 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 925021 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 925022 CCCCACGTTGGGC 925034 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 915843 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 915902 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 915903 CCCACGTTGGGC 915914 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 924505 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 924564 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 924565 CCCACGTTGGGC 924576 >seq109 Length=1191478 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 928767 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 928826 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 928827 CCCCACGTTGGGC 928839 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 930467 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 930408 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 930407 CCCCACGTTGGGC 930395 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 929165 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 929106 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 929105 CCCACGTTGGGC 929094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 929955 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 929896 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 929895 CCCACGTTGGGC 929884 >seq1351 Length=173486 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 115400 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 115459 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 115460 CCCACGTTGGGC 115471 >seq545 Length=455120 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 387665 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 387724 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 387725 CCCACGTTGGGC 387736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027678216987322