Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq540 113 9e-20
seq389 98.7 2e-15
seq183 95.1 2e-14
seq431 91.5 3e-13
seq196 91.5 3e-13
seq109 91.5 3e-13
seq1351 89.7 1e-12
seq545 89.7 1e-12
>seq540
Length=484570
Score = 113 bits (124), Expect = 9e-20
Identities = 295/446 (66%), Gaps = 12/446 (3%)
Strand=Plus/Minus
Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625
||||| ||||| | |||| |||||| ||||||| || |||||| | | ||| ||
Sbjct 96018 CGTTCCATTCCTTGTTTGGTAGATGGCTTCAAGCCTGGCCAACGTAAGGTGATGTTTACC 95959
Query 218626 GCATTCAAGCGGAACCTGGTTCAAG----AAATTAAGGTCGCTCAGTTTTCTGGTTATGT 218681
|||||||| || || |||| | | ||||| || || | ||||||| ||
Sbjct 95958 TGCTTCAAGCGTAA--TGA--CAAGCGTGAGGTGAAGGTAGCCCAACTCTCTGGTTCCGT 95903
Query 218682 ATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGC 218739
||| ||||| || | ||||||||||||||| || || |||| | |||||
Sbjct 95902 ATCTGAAATGTCCGCCTACCATCACGGTGA--AGTTTCACTGCAAATGACAATTGTTAAT 95845
Query 218740 ATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTT 218799
|||| || ||||||||||| ||||| || ||| ||||| |||| ||||||||
Sbjct 95844 TTGGCCCAAAACTATGTGGGCTCGAACAATATCAACCTGCTGGAGCCCAGAGGTCAGTTC 95785
Query 218800 GGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTG 218859
||| || | | ||||| |||||| | ||| ||| | || |||||||||| ||
Sbjct 95784 GGTACTAGGTTGACTGGTGGCAAGGATTGCGCTAGTGCTCGTTACATCTTTACAATTATG 95725
Query 218860 TCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAG 218919
|| || || | || | | || ||| | |||||| | | |||| |
Sbjct 95724 TCTCCTTTGGCCCGTATGATTTTTCATCCCTCGGATGATCCCTTGTTGCAGTACGAAGTC 95665
Query 218920 GACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979
|| |||||| ||||| || | |||||| |||| |||||| | | | |||
Sbjct 95664 GATGATGGTCAAAAAATTGAACCAGTTTGGTATATGCCAATTATTCCTATGGTCTTGGTA 95605
Query 218980 AATGGTGCCAATGGTATCGGGACAGG 219005
||||| ||| |||||||||| |||||
Sbjct 95604 AATGGAGCCGATGGTATCGGTACAGG 95579
>seq389
Length=585855
Score = 98.7 bits (108), Expect = 2e-15
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 142489 CCGGGTGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTG 142548
|| |||| ||| || |||||| |||||||||||||||||| ||||||||||||| |
Sbjct 358403 CCCGGTGTTGAAATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG 358462
Query 142549 GTCGTGGGTTCGAGCCCCACATCGGGC 142575
|||||||||||||||||||| | ||||
Sbjct 358463 GTCGTGGGTTCGAGCCCCACGTTGGGC 358489
Score = 93.3 bits (102), Expect = 9e-14
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 371758 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 371699
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| |||||
Sbjct 371698 CCCACGTTGGGC-GAAGT 371682
Score = 93.3 bits (102), Expect = 9e-14
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 377439 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 377380
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| |||||
Sbjct 377379 CCCACGTTGGGC-GAAGT 377363
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 360042 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 360101
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 360102 CCCACGTTGGGC 360113
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 363113 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 363054
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 363053 CCCACGTTGGGC 363042
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 370982 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 370923
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 370922 CCCACGTTGGGC 370911
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 374374 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 374315
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 374314 CCCACGTTGGGC 374303
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 368147 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAAC 368088
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 368087 CCCACGTTGGGC 368076
>seq183
Length=1007184
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 291214 TGTCCCTTTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 291155
Query 142112 CCCCGCCAGAGA 142123
|||||| || ||
Sbjct 291154 CCCCGCAAGGGA 291143
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109
|||||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct 291877 CATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCG 291818
Query 142110 ACCCCCGCCAGAGA 142123
| |||||| || ||
Sbjct 291817 ATCCCCGCAAGGGA 291804
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 285984 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 285925
Query 142112 CCCCGCCAGAGACGC 142126
|||||| || || ||
Sbjct 285924 CCCCGCAAGGGATGC 285910
>seq431
Length=567316
Score = 91.5 bits (100), Expect = 3e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 113164 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 113223
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| ||||
Sbjct 113224 CCCACGTTGGGCGCAAGT 113241
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 99948 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 100007
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 100008 CCCACGTTGGGC 100019
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 106948 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 106889
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 106888 CCCACGTTGGGC 106877
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 112242 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 112183
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 112182 CCCACGTTGGGC 112171
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 112457 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 112516
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 112517 CCCACGTTGGGC 112528
>seq196
Length=942190
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 924962 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 925021
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 925022 CCCCACGTTGGGC 925034
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 915843 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 915902
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 915903 CCCACGTTGGGC 915914
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 924505 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 924564
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 924565 CCCACGTTGGGC 924576
>seq109
Length=1191478
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 928767 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 928826
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 928827 CCCCACGTTGGGC 928839
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 930467 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 930408
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 930407 CCCCACGTTGGGC 930395
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 929165 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 929106
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 929105 CCCACGTTGGGC 929094
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 929955 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 929896
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 929895 CCCACGTTGGGC 929884
>seq1351
Length=173486
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 115400 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 115459
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 115460 CCCACGTTGGGC 115471
>seq545
Length=455120
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 387665 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 387724
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 387725 CCCACGTTGGGC 387736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027678216987322
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |