Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq404 194 3e-44
seq1094 147 4e-30
>seq404
Length=684826
Score = 194 bits (214), Expect = 3e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || || || || || ||||| || |||||||| || |||||
Sbjct 507030 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 506971
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | |||||||| |||||||| |||||||| || | | |||||||| || |||
Sbjct 506970 AGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGA 506911
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||||||||||||||| || || ||| ||||||||||| | | || |||
Sbjct 506910 ATGCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACT 506851
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||||||| || || | |||||||||||| || |||||
Sbjct 506850 TCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
Score = 188 bits (208), Expect = 1e-42
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||||||| || || || ||||| ||||| |||||||| ||
Sbjct 509008 CCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGAC 508949
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | |||||||| ||||| || || ||||| || | | ||| || || || |||
Sbjct 508948 AATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 508889
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||||||||||||||| || |||||| || ||||| || | || ||| |||
Sbjct 508888 ATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACT 508829
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || |||||||||||||| || |||||||||||||| || |||||
Sbjct 508828 TCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || || || || || || ||||| |||||||| || || ||
Sbjct 509236 CCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 509177
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | |||||||| || ||||| |||||||| || | | ||||||||| || |||
Sbjct 509176 AAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGA 509117
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| || |||||||| || || || || ||||| || || | || ||| |||
Sbjct 509116 ATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACT 509057
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || |||||||||||||| || |||||||||||||| || |||||
Sbjct 509056 TCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||||||||||||||| || | || || |||||||| || || ||||| ||
Sbjct 506574 CCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGAC 506515
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | ||| ||||| | |||||| || ||||| || | || |||||||| |||||
Sbjct 506514 AATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGG 506455
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||||||||| || || || || || ||||| || | | || ||
Sbjct 506454 ATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACC 506395
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||||||||||| || || | || || || || || |||||
Sbjct 506394 TCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| ||||| || || |||||||| |||||||| |||||
Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | || ||||| || ||||| || ||||| || | | ||||| || || |||
Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||||||||| || ||||| || || || || || | | ||| |||
Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| ||||||||||| | ||||| |||||||| |||||
Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||||||||| || | ||||| || || || || || || |||||||| || || ||
Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | |||||||| ||||| || ||||| || || | | ||| || || || |||
Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| || |||||||| || |||||||| || ||||| || | | ||| |||
Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || ||||| || | ||||||||||| || |||||
Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| || || || || || |||||||| |||||||||||
Sbjct 506346 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGAC 506287
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | |||||||| | ||| || ||||| || || | | |||||| || || |||
Sbjct 506286 AAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 506227
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| || ||||||||||| || || || || ||||| || | | ||| ||
Sbjct 506226 ATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACC 506167
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| |||||||| || || || | ||||| ||||| ||||||||
Sbjct 506166 TCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120
>seq1094
Length=241507
Score = 147 bits (162), Expect = 4e-30
Identities = 173/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||| || | || ||||| ||||| ||||| || || ||
Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || || || || || || || || | | |||||| || |||||
Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| |||||||| || || |||||||| || || ||||| | | |||||
Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468
|||||||| |||||||| || || ||||||||||| || ||||||||| | |||
Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTTCTA 166288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921483672788240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |