Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq404 136 3e-27
seq1431 123 2e-23
seq1094 109 5e-19
>seq404
Length=684826
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | ||| || ||||| | ||||||||||||||||| ||||||||
Sbjct 506577 ATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA 506518
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || |||||||| || || |||||| | || | ||||||||||| ||
Sbjct 506517 GACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGT 506458
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331
|| || ||||||||||| ||| ||| | |||| | | ||||| ||| || | | ||
Sbjct 506457 GGGATTCCTTCTTTGTCTTGAAT-TTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTC 506399
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | ||||| || |||| ||||||||||| || ||||||
Sbjct 506398 AACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | |||||||||||| | ||||| || || || |||||||| |||
Sbjct 507033 ATACCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 506974
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| |||||| |||||| | || || || ||| | || | |||||||||||| ||
Sbjct 506973 GACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGG 506914
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| |||||| ||| | | ||| | |||||| | | |||
Sbjct 506913 GGAATGCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCG 506854
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | |||||||| |||| || || || || || |||||
Sbjct 506853 ACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | ||| ||||| | |||||||| ||||| || || ||||||
Sbjct 506349 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCG 506290
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||||| |||||| || |||||||| || |||| | ||| ||||| || |||
Sbjct 506289 GACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGA 506230
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||||||||| || |||||| ||| | | ||||| ||| || | || |||
Sbjct 506229 GGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCA 506170
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || ||||| || | || || || || ||||||||
Sbjct 506169 ACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| |||||||| | | |||||||| | ||||||||||| || |||||||| ||
Sbjct 509239 ATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCT 509180
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| ||| |||||| | ||| || || ||| |||| | || |||||||| ||
Sbjct 509179 GACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGG 509120
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||||||||| || ||| || ||| | | ||| | || |||| | ||||
Sbjct 509119 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCG 509060
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| || | || | ||||| || ||||| || || || || || ||||||
Sbjct 509059 ACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCATG 509009
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| |||||||| | | || ||||||| |||||||||||||||||||| || |||
Sbjct 506805 ATACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCG 506746
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||||| ||||| | ||| || |||||| | || | ||||||||| || ||
Sbjct 506745 GACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGG 506686
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331
||||| ||||||||||| ||| ||| | ||| | | ||| | || || | | |||
Sbjct 506685 GGAATACCTTCTTTGTCTTGAAT-TTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTC 506627
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| || | ||||| || || | || || || || || ||||||
Sbjct 506626 AACTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || |||||||| || || || |||||
Sbjct 509011 ATGCCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCT 508952
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| |||||| |||||| | |||||||||||| |||| | ||| || || || ||
Sbjct 508951 GACAATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGG 508892
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| |||||| ||| | | ||||| ||| |||| | ||||
Sbjct 508891 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCG 508832
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | ||||| || ||||| || || || || || |||||
Sbjct 508831 ACTTCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | |||||||||||| | ||||| || || || |||||||| |||
Sbjct 508783 ATACCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 508724
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| |||||| |||||| | ||||||||||| |||| | ||| || || || ||
Sbjct 508723 GACAGTGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGG 508664
Query 114273 GGAATGCCTTC 114283
||||| |||||
Sbjct 508663 GGAATACCTTC 508653
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| ||||| | || ||||| || || |||||||| || || || ||| ||||||
Sbjct 509446 ACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTCC 509387
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| ||||| || || |||| | ||| || || || || |||||||||||||| || |
Sbjct 509386 AACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTGA 509327
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
|| || || | | ||| | ||| || | || ||| || |||| || | || ||
Sbjct 509326 ATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCTTT 509267
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| || || ||||| |||||
Sbjct 509266 CCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
>seq1431
Length=173026
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| | || |||||||||||| | ||| ||||| ||||| |||||||| || |
Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTC--TG 151263
Query 114216 ATA--GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273
||| |||||| ||||||||| ||||| || || | || | ||| ||||| || || |
Sbjct 151262 ATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTG 151203
Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333
|||| || |||||||| |||||| |||| | ||| | || || | | || |
Sbjct 151202 GAATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAA 151143
Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| || | || | || ||||| || | |||||| ||||||||||||||
Sbjct 151142 CTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094
>seq1094
Length=241507
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || ||||| | || || || |||||||||||||| ||
Sbjct 166052 ATACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCT 166111
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || ||| ||| || | |||||| ||||| |||| | ||| ||||| || ||
Sbjct 166112 GACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGT 166171
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||||||||| || || || | | ||||| ||||||| | ||
Sbjct 166172 GGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCT 166231
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | ||||| ||||| || || || ||||| ||||||||
Sbjct 166232 ACCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCAT 166281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420072740287704
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