Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq305 104 4e-17 >seq305 Length=710094 Score = 104 bits (114), Expect = 4e-17 Identities = 343/525 (65%), Gaps = 20/525 (4%) Strand=Plus/Minus Query 42336 TGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAG 42395 ||||| | ||||| | || ||| | || || | | | | ||||||| ||| | || Sbjct 409065 TGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACTGGGAGAAACTCACAGAC 409006 Query 42396 AACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTC 42455 || |||| | |||| | | | |||| ||||| || ||||| || |||||||| Sbjct 409005 AATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTGCCTCCGATGGCATAGTT 408946 Query 42456 AATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTT 42514 |||||||| || | | || || |||||||||| ||| | || || |||||||| Sbjct 408945 AATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAACT-GAAGCCCGCTGCTT 408887 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 ||| ||||||||||| || || ||||| || ||||| || ||||| || || | | Sbjct 408886 CTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGTACAGCATTCTTATTGA 408827 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| || || |||| | | | ||| | | ||||| ||||| || || ||||| Sbjct 408826 CACCTATATTAAAGATCGTGACCAACGTGAATATTTATTCAATGCCATTGAAACTATGCC 408767 Query 42635 --CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG-----ATCGAGAGTCCCGACG 42687 ||| | || | || || || ||||| | ||| |||| || || | Sbjct 408766 AGCTG--TTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATATCATCG-GATTC----TG 408714 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 | | || || || | | |||| ||| | || || || ||||| |||||| ||| Sbjct 408713 CTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATTCTTCAGCGGCA 408654 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTC 42805 || |||||||| |||||| | ||| || ||| | |||||||| | || ||||| Sbjct 408653 GTTTTGCCTCCATTTTCTGGTTGAAG--AAACGTGGCCTAATGCCCGGCTTAACATTCTC 408596 Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGC 42850 ||||| || || | ||||| || ||||| | || ||||| Sbjct 408595 CAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGC 408551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944197053341920