Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq305 104 4e-17
>seq305
Length=710094
Score = 104 bits (114), Expect = 4e-17
Identities = 343/525 (65%), Gaps = 20/525 (4%)
Strand=Plus/Minus
Query 42336 TGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAG 42395
||||| | ||||| | || ||| | || || | | | | ||||||| ||| | ||
Sbjct 409065 TGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACTGGGAGAAACTCACAGAC 409006
Query 42396 AACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTC 42455
|| |||| | |||| | | | |||| ||||| || ||||| || ||||||||
Sbjct 409005 AATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTGCCTCCGATGGCATAGTT 408946
Query 42456 AATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTT 42514
|||||||| || | | || || |||||||||| ||| | || || ||||||||
Sbjct 408945 AATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAACT-GAAGCCCGCTGCTT 408887
Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574
||| ||||||||||| || || ||||| || ||||| || ||||| || || | |
Sbjct 408886 CTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGTACAGCATTCTTATTGA 408827
Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634
||| || || |||| | | | ||| | | ||||| ||||| || || |||||
Sbjct 408826 CACCTATATTAAAGATCGTGACCAACGTGAATATTTATTCAATGCCATTGAAACTATGCC 408767
Query 42635 --CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG-----ATCGAGAGTCCCGACG 42687
||| | || | || || || ||||| | ||| |||| || || |
Sbjct 408766 AGCTG--TTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATATCATCG-GATTC----TG 408714
Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747
| | || || || | | |||| ||| | || || || ||||| |||||| |||
Sbjct 408713 CTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATTCTTCAGCGGCA 408654
Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTC 42805
|| |||||||| |||||| | ||| || ||| | |||||||| | || |||||
Sbjct 408653 GTTTTGCCTCCATTTTCTGGTTGAAG--AAACGTGGCCTAATGCCCGGCTTAACATTCTC 408596
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGC 42850
||||| || || | ||||| || ||||| | || |||||
Sbjct 408595 CAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGC 408551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944197053341920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |