Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq404 145 2e-29
>seq404
Length=684826
Score = 145 bits (160), Expect = 2e-29
Identities = 150/195 (77%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| || |||||||||| | || ||||||||||| ||||| || || |||||
Sbjct 506767 TTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAA 506708
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||||||||| ||||||| || |||||||| || || ||||| || || ||
Sbjct 506707 AATCAAACGCTGTTG---ATCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTAAC 506651
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||||||| ||| | ||| ||||| || ||||| || || || || | |||||
Sbjct 506650 ATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTT 506591
Query 288459 GACGAATATCTGCAT 288473
|||||||| |||||
Sbjct 506590 AACGAATATTTGCAT 506576
Score = 141 bits (156), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | ||| | || |||||| ||||| || ||||| |
Sbjct 509236 CCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 509177
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| ||||| || || |||||||| | || ||||| ||||||
Sbjct 509176 AAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGG---TCTGGG 509120
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||||||||| || ||||| |||||||| ||||| |||| |||| | |||
Sbjct 509119 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCG 509060
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 509059 ACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 132 bits (146), Expect = 1e-25
Identities = 172/235 (73%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | ||||| | || | || |||||| ||||||||||| |
Sbjct 509012 CATG-CCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAAT 508954
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | | || || || ||||| || ||||| || |||||||||| ||| || ||| |
Sbjct 508953 CTGACAATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGA---T 508897
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || ||||| || || || || || ||||| |||||||| || | |||| |
Sbjct 508896 CTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATG 508837
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| ||||| | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 508836 GTTCGACTTCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 132 bits (146), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| ||||| || | ||| || | ||| | || ||| || ||||| || ||||| |
Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| || ||||| || || ||||||| ||| || ||| ||||||
Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGA---TCTGGG 509348
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||||||||| || ||||| || || || |||||||| | ||| | |||
Sbjct 509347 GGAATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCC 509288
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||| || ||||| || |||| |||||||||||| || |||||
Sbjct 509287 ACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 129 bits (142), Expect = 1e-24
Identities = 171/235 (73%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| || | ||||| || ||| |||||||||||||| |
Sbjct 506350 CATG-CCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAAT 506292
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| | || ||||| ||||| | ||||| || || ||||||| ||| |||||| |
Sbjct 506291 CGGACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGA---T 506235
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
|||| || ||||||||||| || || || ||||| || ||||| || | ||| |
Sbjct 506234 CTGGAGGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGG 506175
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| || || | ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 506174 GTTCAACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || || || || ||||| || || || || |||||
Sbjct 506994 TCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAA 506935
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| ||||||||| |||||| || ||||| || || || || || |||||||||
Sbjct 506934 ATCAAACGCTGTTGG---TCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTCACG 506878
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | || | || |||||||| ||||| || || || |||| ||||||
Sbjct 506877 TTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTG 506818
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 506817 ACGAAGATTTGCAT 506804
Score = 95.1 bits (104), Expect = 3e-14
Identities = 161/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | | ||| | ||| | || ||||||||| ||||| || |
Sbjct 506578 CATG-CCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAAT 506520
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | | || || |||||||| | || || || ||||| |||| ||||||||
Sbjct 506519 CAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTG 506460
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||||||||||||| || || ||||| ||||| || ||||| || | ||| | |
Sbjct 506459 GTGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCT 506400
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || | ||||| || || || |||| || || || || || |||||
Sbjct 506399 CAACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179472393334476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |